@Misc{091030-HPC-China-Keynote-Final-LowRes, author = {Feng, Wu-chun}, title = "{Green Supercomputing Comes of Age}", booktitle = {HPC China, Changsha, China}, month = {October}, year = {2009}, note = {Keynote Talk}, } @Misc{100520-WFU-Bioinformatics, author = {Feng, Wu-chun}, title = "{When High-Performance Computing Meets Bioinformatics}", booktitle = {Wake Forest University – School of Medicine, Winston Salem, NC}, month = {June}, year = {2010}, } @Misc{100929-GHC-MyVICE, author = {Datoc, Michelle and Feng, Wu-chun}, title = "{Enhancing Early Childhood Education with Computer Science Curriculum}", booktitle = {Grace Hopper Conference}, address = {Atlanta, GA}, month = {September}, year = {2010}, } @Misc{100929-datoc-GHC-MyVICE, author = {Datoc, Michelle and Feng, Wu-chun}, title = "{Enhancing Early Childhood Education with Computer Science Curriculum}", booktitle = {Grace Hopper Conference}, address = {Atlanta, GA}, month = {September}, year = {2010}, } @Misc{101022-WFU-ChipOnChip-Overview, author = {Cao, Yong and Patnaik, D and Ponce, Sean and Feng, Wu-chun and Ramakrishnan, Naren}, title = "{Towards Chip-on-Chip Neuroscience: Fast Mining of Neuronal Spike Streams Using Graphics Hardware}", booktitle = {7th ACM International Conference on Computing Frontiers, ACM, New York, NY, USA}, month = {May}, year = {2010}, } @Misc{101117-Green_Computing_and_GPUs, author = {Feng, Wu-chun}, title = "{GPU Computing and the Green500}", booktitle = {NVIDIA Theater, ACM/IEEE Supercomputing (SC), New Orleans, LA}, month = {November}, year = {2010}, } @Misc{110610-HPDC-Keynote, author = {Feng, Wu-chun}, title = "{Energy-Efficient E-putting Everywhere}", booktitle = {20th ACM International Symposium on High-Performance Distributed Computing (HPDC), San Jose, CA}, month = {June}, year = {2011}, note = {Keynote Talk}, } @Misc{110614-AFDS-OpenCL-13Dwarfs-Final, author = {Feng, Wu-chun}, title = "{OpenCL and the 13 Dwarfs}", booktitle = {AMD Fusion Developer Summit, Bellvue, WA}, month = {June}, year = {2011}, note = {Invited Talk}, } @Misc{110925-IEEE-Cluster-PPAC-ThreePs, author = {Feng, Wu-chun}, title = "{On the Three P's of Heterogeneous Computing with Accelerators}", booktitle = {Workshop on Parallel Programming on Accelerator Clusters (PPAC) at IEEE Cluster}, month = {September}, year = {2011}, note = {Keynote Talk}, } @Misc{110930-AMD-Feng-HeteroEco, author = {Feng, Wu-chun}, title = "{An Ecosystem for Heterogeneous Parallel Computing}", booktitle = {AMD Research, Austin, TX}, month = {September}, year = {2011}, } @Misc{111115-SC11-CUDA_Anywhere-16x9, author = {Feng, Wu-chun}, title = "{How to Run Your CUDA Program Anywhere}", booktitle = {NVIDIA Theater, ACM/IEEE International Conference on High- Performance Computing, Networking, Storage, and Analysis (SC), Seattle, WA}, month = {November}, year = {2011}, } @Misc{120525-AsHES-NewHPC, author = {Feng, Wu-chun}, title = "{An Ecosystem for the New HPC: Heterogeneous Parallel Computing}", booktitle = {2nd International Workshop on Accelerators and Hybrid Exascale Systems (AsHES), Shanghai, China}, month = {May}, year = {2012}, } @Misc{120612-AFDS-CU2CL-16x9, author = {Feng, Wu-chun}, title = "{CU2CL: An Automated CUDA-to-OpenCL Source-to-Source Translator}", booktitle = {AMD Fusion Developer Summit, Bellevue, WA}, month = {June}, year = {2012}, } @Misc{120912-BioIT-MOON, author = {Feng, Wu-chun}, title = "{Forget about the Clouds, Shoot for the MOON}", booktitle = {BioIT World Cloud Computing Summit, San Francisco, CA}, month = {September}, year = {2012}, } @Misc{140327-HPCC-Green500, author = {Feng, Wu-chun}, title = "{On the Path to Energy-Efficient Exascale: A Perspective from the Green500}", booktitle = {28th Annual HPCC Conference}, month = {March}, year = {2014}, } @InProceedings{adhinarayanan-channelizer-reconfig14, author = {Adhinarayanan, Vignesh and Koehn, Thaddeus and Kepa, Krzysztof and Feng, Wu-chun and Athanas, Peter}, title = "{On the Performance and Energy Efficiency of FPGAs and GPUs for Polyphase Channelization}", booktitle = {International Conference on ReConFigurable Computing and FPGAs}, address = {Cancun, Mexico}, month = {December}, year = {2014}, } @InProceedings{adhinarayanan-characterizing-ipdps17, author = {Adhinarayanan, Vignesh and Feng, Wu-chun and Rogers, David and Ahrens, James and Pakin, Scott}, title = "{Characterizing and Modeling Power and Energy for Extreme-Scale In-situ Visualization}", booktitle = {IEEE International Parallel and Distributed Processing Symposium}, address = {Orlando, Florida}, month = {May}, year = {2017}, } @InProceedings{adhinarayanan-eth-visualization-ipdps2020, author = {Abram, Gregory and Adhinarayanan, Vignesh and Feng, Wu-chun and Rogers, David and Ahrens, James}, title = "{ETH: An Architecture for Exploring the Design Space of In-situ Scientific Visualization}", booktitle = {34th IEEE International Parallel and Distributed Processing Symposium}, address = {New Orleans, Louisiana USA}, month = {May}, year = {2020}, } @InProceedings{adhinarayanan-gpumodel-ccgrid16, author = {Adhinarayanan, Vignesh and Subramaniam, Balaji and Feng, Wu-chun}, title = "{Online Power Estimation of Graphics Processing Units}", booktitle = {16th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGrid)}, address = {Cartagena, Colombia}, month = {May}, year = {2016}, } @InProceedings{adhinarayanan-green-high-perf-vis-hppac18, author = {Adhinarayanan, Vignesh and Dutta, Bishwajit and Feng, Wu-chun}, title = "{Making a Case for Green High-Performance Visualization via Embedded Graphics Processors}", booktitle = {14th Workshop on High-Performance, Power-Aware Computing (HPPAC) held in conjunction with the 32nd International Parallel and Distributed Processing Symposium (IPDPS)}, address = {Vancouver, British Columbia, Canada}, month = {May}, year = {2018}, } @InProceedings{adhinarayanan-green-visualization-hppac18, author = {Adhinarayanan, Vignesh and Dutta, Bishwajit and Feng, Wu-chun}, title = "{Making a Case for Green High-Performance Visualization via Embedded Graphics Processors}", booktitle = {14th Workshop on High-Performance, Power-Aware Computing (HPPAC) held in conjunction with the 32nd International Parallel and Distributed Processing Symposium (IPDPS)}, address = {Vancouver, British Columbia}, month = {May}, year = {2018}, } @InProceedings{adhinarayanan-icpads2013-sdr, author = {Adhinarayanan, Vignesh and Feng, Wu-chun}, title = "{Wideband Channelization for Software-Defined Radio via Mobile Graphics Processors}", booktitle = {19th IEEE International Conference on Parallel and Distributed Systems (ICPADS 2013)}, address = {Seoul, Korea}, month = {December}, year = {2013}, } @InProceedings{adhinarayanan-interconnect-iiswc16, author = {Adhinarayanan, Vignesh and Paul, Indrani and Greathouse, Joseph and Huang, Wei and Pattnaik, Ashutosh and Feng, Wu-chun}, title = "{Measuring and Modeling On-chip Interconnect Power on Real Hardware}", booktitle = {IEEE International Symposium on Workload Characterization (IISWC)}, address = {Providence, Rhode Island, USA}, month = {September}, year = {2016}, note = { Best Paper Award}, } @InProceedings{adhinarayanan-ispass16-subsetting, author = {Adhinarayanan, Vignesh and Feng, Wu-chun}, title = "{An Automated Framework for Characterizing and Subsetting GPGPU Workloads}", booktitle = {IEEE International Symposium on Performance Analysis of Systems and Software (ISPASS)}, address = {Uppsala, Sweden}, month = {April}, year = {2016}, } @InProceedings{aji-ashes13-mpiacc-ordering, author = {Aji, Ashwin M. and Balaji, Pavan and Dinan, James and Feng, Wu-chun, and Thakur, Rajeev}, title = "{Synchronization and Ordering Semantics in Hybrid MPI GPU Programming}", booktitle = {3rd International Workshop on Accelerators and Hybrid Exascale Systems (AsHES)}, address = {Boston, USA}, month = {June}, year = {2013}, } @InProceedings{aji-bibe08-ps3, author = {Aji, Ashwin M. and Feng, Wu-chun}, title = "{Optimizing Performance, Cost, and Sensitivity in Pairwise Sequence Search on a Cluster of PlayStations}", booktitle = {IEEE International Conference on BioInformatics and BioEngineering}, address = {Athens, Greece}, month = {October}, year = {2008}, } @InProceedings{aji-biocomputing-iccabs11, author = {Bisset, Keith and Aji, Ashwin M. and Marathe, Madhav and Feng, Wu-chun}, title = "{High-Performance Biocomputing for Simulating the Spread of Contagion over Large Contact Networks}", booktitle = {IEEE International Conference on Computational Advances in Bio and medical Sciences (ICCABS)}, address = {Orlando, Florida, USA}, month = {February}, year = {2011}, } @InProceedings{aji-cf08-cellswat, author = {Aji, Ashwin M. and Feng, Wu-chun and Blagojevic, Filip and Nikolopoulos, Dimitrios S.}, title = "{Cell-SWat: Modeling and Scheduling Wavefront Computations on the Cell Broadband Engine}", booktitle = {5th ACM International Conference on Computing Frontiers}, address = {Ischia, Italy}, month = {May}, year = {2008}, } @InProceedings{aji-gpu-rmap-cse10, author = {Aji, Ashwin M. and Zhang, Liqing and Feng, Wu-chun}, title = "{GPU-RMAP: Accelerating Short-Read Mapping on Graphics Processors}", booktitle = {13th IEEE International Conference on Computational Science and Engineering}, address = {Hong Kong, China}, month = {December}, year = {2010}, } @InProceedings{aji-hpcc12-mpiacc, author = {Aji, Ashwin M. and Dinan, James and Buntinas, Darius and Balaji, Pavan and Feng, Wu-chun and Bisset, Keith R. and Thakur, Rajeev}, title = "{MPI-ACC: An Integrated and Extensible Approach to Data Movement in Accelerator-Based Systems}", booktitle = {14th IEEE International Conference on High Performance Computing and Communications}, address = {Liverpool, UK}, month = {June}, year = {2012}, } @InProceedings{aji-hpdc13-mpiacc-apps, author = {Aji, Ashwin M. and Panwar, Lokendra S. and Ji, Feng and Chabbi, Milind and Murthy, Karthik and Balaji, Pavan and Bisset, Keith R. and Dinan, James and Feng, Wu-chun and Mellor-Crummy, John and Ma, Xiaosong and Thakur, Rajeev}, title = "{On the Efficacy of GPU-Integrated MPI for Scientific Applications}", booktitle = {ACM International Symposium on High-Performance Parallel and Distributed Computing (HPDC)}, address = {New York, USA}, month = {June}, year = {2013}, } @InProceedings{aji-intranode-comm-ashes12, author = {Ji, Feng and Aji, Ashwin and Dinan, James and Buntinas, Darius and Balaji, Pavan and Feng, Wu-chun and Ma, Xiaosong}, title = "{Efficient Intranode Communication in GPU-Accelerated Systems}", booktitle = {2nd IEEE International Workshop on Accelerators and Hybrid Exascale Systems (in conjunction with the 26th IEEE International Parallel and Distributed Processing Symposium)}, address = {Shanghai, China}, month = {May}, year = {2012}, } @Article{aji-mpi-acc-tpds15, author = {Aji, Ashwin M. and Panwar, Lokendra and Ji, Feng and Murthy, Karthik and Chabbi, Milind and Balaji, Pavan and Bisset, Keith and Dinan, James and Feng, Wuchun and Mellor-Crummey, John and Ma, Xiaosong and Thakur, Rajeev}, title = "{MPI-ACC: Accelerator-Aware MPI for Scientific Applications}", journal = {IEEE Transactions on Parallel and Distributed Systems}, volume = {PP}, number = {99}, month = {June}, year = {2015}, } @InProceedings{aji-part-camp-cf11, author = {Aji, Ashwin M. and Daga, Mayank and Feng, Wu-chun}, title = "{Bounding the Effect of Partition Camping in GPU Kernels}", booktitle = {ACM International Conference on Computing Frontiers}, address = {Ischia, Italy}, month = {May}, year = {2011}, } @InProceedings{aji-queue-sch-cluster15, author = {Aji, Ashwin M. and Pena, Antonio J. and Balaji, Pavan and Feng, Wu-chun}, title = "{Automatic Command Queue Scheduling for Task-Parallel Workloads in OpenCL}", booktitle = {IEEE Cluster}, address = {Chicago, Illinois}, month = {September}, year = {2015}, } @Misc{aji-thesis-2008-multigrain-parallelism, author = {Ashwin Aji}, title = "{Exploiting Multigrain Parallelism in Pairwise Sequence Search on Emergent CMP Architectures}", booktitle = {Virginia Tech}, month = {August}, year = {2008}, } @Misc{aji-thesis-2015-prog-hpc-cluster, author = {Aji, Ashwin M.}, title = "{Programming High-Performance Clusters with Heterogeneous Computing Devices}", booktitle = {Virginia Tech}, month = {May}, year = {2015}, } @InProceedings{amritkar-mav-aiaa-14, author = {Amritkar, Amit and Tafti, Danesh and Sathre, Paul and Hou, Kaixi and Chivukula, Sriram and Feng, Wu-chun}, title = "{Accelerating Bio-Inspired MAV Computations using GPUs}", booktitle = {AIAA Aviation and Aeronautics Forum and Exposition 2014}, address = {Atlanta, Georgia}, month = {June}, year = {2014}, } @InProceedings{anandakrishnan-multiscale-gpu-bcb16, author = {Anandakrishnan, Ramu and Daga, Mayank and Onufriev, Alexey and Feng, Wu-chun}, title = "{Multiscale Approximation with Graphical Processing Units for Multiplicative Speedup in Molecular Dynamics}", booktitle = {7th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics}, address = {Seattle, WA, USA}, month = {October}, year = {2016}, } @InProceedings{archuleta-embc2007-pluggable, author = {Archuleta, Jeremy S. and Feng, Wu-chun and Tilevich, Eli}, title = "{A Pluggable Framework for Parallel Pairwise Sequence Search}", booktitle = {International Conference of the IEEE Engineering in Medicine and Biology Society}, address = {Lyon, France}, month = {August}, year = {2007}, } @InProceedings{archuleta-icsm2006-mpiblast, author = {Archuleta, Jeremy S. and Tilevich, Eli and Feng, Wu-chun}, title = "{A Maintainable Software Architecture for Fast and Modular Bioinformatics Sequence Search}", booktitle = {23rd IEEE International Conference on Software Maintenance}, address = {Paris, France}, month = {October}, year = {2007}, } @InProceedings{archuleta-icsm2007-mpiblast, author = {Archuleta, Jeremy S. and Tilevich, Eli and Feng, Wu-chun}, title = "{A Maintainable Software Architecture for Fast and Modular Bioinformatics Sequence Search}", booktitle = {23rd IEEE International Conference on Software Maintenance}, address = {Paris, France}, month = {October}, year = {2007}, } @InProceedings{archuleta-ipdps09-datamining, author = { and and and }, title = "{}", address = {}, month = {May}, year = {2009}, } @InProceedings{arisoylu-ccn2008-multihop, author = {Arisoylu, Mustafa and Feng, Wu-chun}, title = "{Achieving Edge-Based Fairness in a Multi-Hop Environment}", booktitle = {5th IEEE Consumer Communications and Networking Conference}, address = {Las Vegas, Nevada, USA}, month = {January}, year = {2008}, } @InProceedings{atharva-characterization-fpga-hpec2022, author = { and and }, title = "{}", address = {}, month = {September}, year = {2022}, } @Misc{atharva-cpu-gpu-jaccard-sc23, author = { and and }, title = "{}", address = {}, month = {November}, year = {2023}, } @InProceedings{atharva-perf-prod-port-hpec2023, author = { and }, title = "{}", address = {}, month = {September}, year = {2023}, note = {}, } @InProceedings{ayyorgun-ciss2004-charecterization, author = {Ayyorgun, Sami and Feng, Wu-chun}, title = "{A Deterministic Characterization of Network Traffic for Average Performance Guarantee}", booktitle = {38th Annual Conference on Information Sciences and Systems (CISS'04)}, address = {Princeton, New Jersey}, month = {March}, year = {2004}, } @InProceedings{ayyorgun-icccn2004-qos, author = {Ayyorgun, Sami and Feng, Wu-chun}, title = "{A Systematic Approach for Providing End-to-end Probabilistic QoS Guarantee}", booktitle = {13th IEEE International Conference on Computer Communications and Networks (ICCCN'04)}, address = {Chicago, Illinois}, month = {October}, year = {2004}, } @InProceedings{ayyorgun-infocom2005-qcomposer, author = {Ayyorgun, Sami and Vanichpun, Sarut and Feng, Wu-chun}, title = "{Q-Composer and CpR: A Probabilistic Synthesizer and Regulator of Traffic}", booktitle = {24th IEEE Conference on Computer Communications (INFOCOM'05)}, address = {Miami, Florida}, month = {March}, year = {2005}, } @TechReport{ayyorgun-june2003-deterministic, author = {S. Ayyorgun and Feng, Wu-chun}, title = "{A Deterministic Definition of Burstiness for Network Traffic Characterization}", booktitle = {Los Alamos}, month = {June}, year = {2003}, } @TechReport{ayyorgun-june2003-loss, author = {S. Ayyorgun and R. Cruz}, title = "{A Service Curve Model with Loss}", booktitle = {Los Alamos}, month = {June}, year = {2003}, } @TechReport{ayyorgun-may2003-burstiness, author = {S. Ayyorgun and Feng, Wu-chun}, title = "{A Probabilistic Definition of Burstiness Characterization}", booktitle = {Los Alamos}, month = {May}, year = {2003}, } @TechReport{ayyorgun-oct2003-interference, author = {Ayyorgun, Sami and R. Cruz}, title = "{Interference Control at Packet-level in Wireless Networks with Quality of Service Support}", booktitle = {Los Alamos}, month = {October}, year = {2003}, } @TechReport{ayyorgun-sep2003-bipartite, author = {Ayyorgun, Sami and Feng, Wu-chun}, title = "{A Restricted Matching Problem on Bipartite Graphs}", booktitle = {Los Alamos}, month = {September}, year = {2003}, } @TechReport{ayyorgun-sep2003-serviceguarantees, author = {Ayyorgun, Sami and Feng, Wu-chun}, title = "{A Systematic Approach to Probablistic Quality of Service Guarantees in Communication Networks}", booktitle = {Los Alamos}, month = {September}, year = {2003}, } @TechReport{ayyorgun-sep2003-traffic, author = {Ayyorgun, Sami and Feng, Wu-chun}, title = "{A New Traffic Model and Its Implications over Multiplexers and Switches}", booktitle = {Los Alamos}, month = {September}, year = {2003}, } @Article{balaji-cc10-global-io-paramedic, author = {Balaji, Pavan and Feng, Wu-chun and Lin, Heshan and Archuleta, Jeremy and Matsuoka, S. and Warren, A. and Setubal, J. and Lusk, E. and Thakur, R. and Foster, Ian and Katz, D. and Jha, S. and Shinpaugh, K. and Coghlan, S. and Reed, D.}, title = "{Global-Scale Distributed I/O with ParaMEDIC}", journal = {Concurrency and Computation: Practice and Experience}, volume = {22}, number = {16}, month = {November}, year = {2010}, } @InProceedings{balaji-cluster2005-toe, author = {Balaji, Pavan and Feng, Wu-chun and Gao, Qi and Noronha, Ranjit and Yu, Weikuan and Panda, Dhabaleswar K.}, title = "{Head-to-TOE Evaluation of High-Performance Sockets over Protocol Offload Engines}", booktitle = {7th IEEE International Conference on Cluster Computing (CLUSTER'05)}, address = {Boston, Massachusetts}, month = {September}, year = {2005}, } @InProceedings{balaji-energy-proportionality-pmbs14, author = {Subramaniam, Balaji and Feng, Wu-chun}, title = "{On the Energy Proportionality of Distributed NoSQL Data Stores}", booktitle = {Performance Modeling, Benchmarking and Simulation of High Performance Computer Systems (PMBS14)}, address = {New Orleans, LA, USA}, month = {November}, year = {2014}, note = {Held as part of SC14.}, } @InProceedings{balaji-hpdc08-paramedic, author = {Balaji, Pavan and Feng, Wu-chun and Lin, Heshan}, title = "{Semantic-based Distributed I/O with the ParaMEDIC Framework}", booktitle = {17th ACM/IEEE International Symposium on High-Performance Distributed Computing}, address = {Boston, Massachusetts, USA}, month = {June}, year = {2008}, } @InProceedings{balaji-hpdc08, author = {Balaji, Pavan and Feng, Wu-chun and Lin, Heshan}, title = "{Semantic-based Distributed I/O with the ParaMEDIC Framework.}", booktitle = {17th ACM/IEEE International Symposium on High-Performance Computing}, address = {Boston, Massachusetts, USA}, month = {June}, year = {2008}, } @Article{balaji-ieeemicro2006-ethernot, author = {Balaji, Pavan and Feng, Wu-chun and Panda, Dhabaleswar K.}, title = "{Bridging the Ethernet-Ethernot Performance Gap}", journal = {IEEE Micro (Special Issue: High-Performance Interconnects)}, volume = {26}, number = {3}, month = {May}, year = {2006}, } @InProceedings{balaji-igcc13-green500, author = { and and and }, title = "{}", address = {}, month = {June}, year = {2013}, } @InProceedings{balaji-power-meas-green500-greencom10, author = {Balaji Subramaniam and Wu-chun Feng}, title = "{Understanding Power Measurement Implications in the Green500 List}", booktitle = {IEEE/ACM International Conference on Green Computing and Communications (GreenCom)}, address = {Hangzhou, China}, month = {December}, year = {2010}, } @Misc{balaji-ppopp2008-paramedic-poster, author = {Balaji, Pavan and Feng, Wu-chun and Archuleta, Jeremy and Lin, Heshan and Kettimuthu, Rajkumar and Thakur, Rajeev and Ma, Xiaosong}, title = "{Semantics-based Distributed I/O for mpiBLAST}", booktitle = {ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming}, address = {Salt Lake City, Utah, USA}, month = {February}, year = {2008}, } @InProceedings{balaji-ppopp2008-paramedic_poster, author = {Balaji, Pavan and Feng, Wu-chun and Archuleta, Jeremy and Lin, Heshan and Kettimuthu, Rajkumar and Thakur, Rajeev and Ma, Xiaosong}, title = "{Semantics-based Distributed I/O for mpiBLAST (Short Paper)}", booktitle = {ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming}, address = {Salt Lake City, Utah, USA}, month = {February}, year = {2008}, } @InProceedings{balaji-rapl-icpe13, author = {Subramaniam, Balaji and Feng, Wu-chun}, title = "{Towards Energy-Proportional Computing for Enterprise-Class Server Workloads}", booktitle = {3rd ACM/SPEC International Conference on Performance Engineering (ICPE)}, address = {Prague, Czech Republic}, month = {April}, year = {2013}, note = { Best Paper Award}, } @InProceedings{balaji-sc2007-iwarp, author = {Balaji, Pavan and Feng, Wu-chun and Bhagvat, Sitha and Panda, Dhabaleswar and Thakur, Rajeev and Gropp, William}, title = "{Analyzing the Impact of Supporting Out-of-Order Communication on In- Order Performance with iWARP}", booktitle = {ACM/IEEE SC|07: The International Conference on High-Performance Computing, Networking, Storage, and Analysis}, address = {Reno, Nevada, USA}, month = {November}, year = {2007}, } @InProceedings{balaji-stat-opt-greencom10, author = {Balaji Subramaniam and Wu-chun Feng}, title = "{Statistical Power and Performance Modeling for Optimizing the Energy Efficiency of Scientific Computing}", booktitle = {IEEE/ACM International Conference on Green Computing and Communications (GreenCom)}, address = {Hangzhou, China}, month = {December}, year = {2010}, } @InProceedings{banerjee-chip-gmm-bicob17, author = {Banerjee, Sharmi and Chen, Xi and Wu, Xiaowei and Xie, Hehuang and Xuan, Jianhua and Feng, Wu-chun}, title = "{ChIP-GMM: A Gaussian Mixture Model for Inferring Binding Regions in ChIP-seq Pro}", booktitle = {9th International Conference on Bioinformatics and Computational Biology (BiCoB)}, address = {Honolulu, HI}, month = {March}, year = {2017}, } @InProceedings{banerjee-infocomhsnw2006-optical, author = {Banerjee, Amitabha and Feng, Wu-chun and Mukherjee, Biswanath and Ghosal, Dipak}, title = "{End-system Performance Aware Transport over Optical Circuit-Switched Connections}", booktitle = {IEEE INFOCOM High-Speed Networking Workshop: The Terabits Challenge (in conjunction with the 25th IEEE INFOCOM)}, address = {Barcelona, Spain}, month = {April}, year = {2006}, } @InProceedings{banerjee-ipdps2006-rapid, author = {Banerjee, Amitabha and Feng, Wu-chun and Mukherjee, Biswanath and Ghosal, Dipak}, title = "{RAPID: An End-System Aware Protocol for Intelligent Data-Transfer over LambdaGrids}", booktitle = {20th International Parallel and Distributed Processing Symposium (IPDPS)}, address = {Rhodes, Greece}, month = {April}, year = {2006}, } @InProceedings{banerjee-plfdnet2005-lambda, author = {Banerjee, Amitabha and Feng, Wu-chun and Ghosal, Dipak and Mukherjee, Biswanath}, title = "{Routing and Scheduling Large File Transfers over Lambda Grids}", booktitle = {3rd International Workshop on Protocols for Fast Long-Distance Networks (PFLDnet'05)}, address = {Lyon, France}, month = {February}, year = {2005}, } @Article{banerjee-stem-cells-frontgenet19, author = {Banerjee, Sharmi and Zhu, Hongxiao and Tang, Man and Feng, Wu-chun and Xie, Hehuang}, title = "{Identifying Transcriptional Regulatory Modules among Different Chromatin States in Mouse Neural Stem Cells}", journal = {Frontiers in Genetics}, volume = {9}, month = {January}, year = {2019}, } @Article{banerjee-tpds2008-lambdagrid, author = {Banerjee, Amitabha and Feng, Wu-chun and Ghosal, Dipak and Mukherjee, Biswanath}, title = "{Algorithms for Integrated Routing and Scheduling for Aggregating Data from Distributed Resources on a Lambda Grid}", journal = {IEEE Transactions on Parallel and Distributed Systems}, volume = {19}, number = {1}, month = {January}, year = {2008}, } @Article{bisset-bmc12-high-perf-biocomputing, author = {Bisset, Keith R. and Aji, Ashwin M. and Marathe, Madhav V. and Feng, Wu-chun}, title = "{High-Performance Biocomputing for Simulating the Spread of Contagion over Large Contact Networks}", journal = {BMC Genomics}, volume = {13}, number = {S2}, month = {April}, year = {2012}, } @Misc{braithwaite-thesis-2012-numa, author = {Ryan Braithwaite}, title = "{NUMA Data-Access Bandwidth Characterization and Modeling}", booktitle = {Virginia Tech}, month = {January}, year = {2012}, } @InProceedings{brown-ic3n11-middleboxes, author = {Brown, Eric and Gardner, Mark and Kalim, Umar and Feng, Wu-chun}, title = "{Restoring End-to-End Resilience in the Presence of Middleboxes}", booktitle = {20th IEEE International Conference on Computer Communications and Networking (ICCCN)}, address = {Maui, Hawaii}, month = {August}, year = {2011}, } @InProceedings{brown-iticse10-cs-education-multicore, author = {Brown, Richard and Shoop, Elizabeth and Adams, Joel and Clifton, Curtis and Gardner, Mark and Haupt, Michael and Hinsbeeck, Peter}, title = "{Strategies for Preparing Computer Science Students for the Multicore World}", booktitle = {15th Annual Conference on Innovation and Technology in Computer Science Education (ITiCSE)}, address = {Bilkent, Ankara, Turkey}, month = {June}, year = {2010}, } @InProceedings{cao-acmcf2010-chip, author = {Cao, Yong and Patnaik, Debprakash and Ponce, Sean and Archuleta, Jeremy and Butler, Patrick and Feng, Wu-chun and Ramakrishnan, Naren}, title = "{Towards Chip-on-Chip Neuroscience: Fast Mining of Neuronal Spike Streams Using Graphics Hardware}", booktitle = {7th ACM International Conference on Computing Frontiers}, address = {Bertinoro, Italy}, month = {May}, year = {2010}, } @InProceedings{chaturvedi-ddnet-sparsity-iccabs2023, author = { and and }, title = "{}", address = {}, month = {December}, year = {2023}, } @InProceedings{ching-hpdc2006-s3asim, author = {Ching, Avery and Feng, Wu-chun and Lin, Heshan and Ma, Xiaosong and Choudhary, Alok}, title = "{Exploring I/O Strategies for Parallel Sequence Database Search Tools with S3aSim}", booktitle = {15th IEEE International Symposium on High-Performance Distributed Computing (HPDC’06)}, address = {Paris, France}, month = {June}, year = {2006}, } @Misc{cui-directive-partitioning-sc17, author = {Cui, Xuewen and Scogland, Thomas R. W. and de Supinski, Bronis R. and Feng, Wu-chun}, title = "{Performance Evaluation of the NVIDIA Tesla P100: Our Directive-Based Partitioning and Pipelining vs. NVIDIA}", booktitle = {ACM/IEEE International Conference for High Performance Computing, Networking, Storage and Analysis (SC17)}, address = {Denver, CO}, month = {November}, year = {2017}, } @Misc{cui-dissertation-2020, author = {}, title = "{}", month = {September}, year = {2020}, } @InProceedings{cui-iter-ml-cf19, author = {Cui, Xuewen and Feng, Wu-chun}, title = "{Iterative Machine Learning (IterML) for Effective Parameter Pruning and Tuning in Accelerators}", booktitle = {16th ACM International Conference on Computing Frontiers}, address = {Alghero, Sardinia, Italy}, month = {April}, year = {2019}, } @Article{cui-iterml-units-jsps2020, author = { and }, title = "{}", volume = {93}, number = {1}, month = {April}, year = {2021}, } @Misc{cui-performance-v100-pipelining, author = { and and and }, title = "{}", address = {}, month = {November}, year = {2018}, } @InProceedings{cui-pipelining-ipdps17, author = {Cui, Xuewen and Scogland, Thomas R. W. and de Supinski, Bronis R. and Feng, Wu-chun}, title = "{Directive-Based Partitioning and Pipelining for Graphics Processing Units}", booktitle = {IEEE International Parallel and Distributed Processing Symposium}, address = {Orlando, Florida}, month = {May}, year = {2017}, } @Article{daga-bmcbio12-multi-dim-characterization, author = {Daga, Mayank and Feng, Wu-chun}, title = "{Multi-Dimensional Characterization of Electrostatic Surface Potential Computation on Graphics Processors}", journal = {BMC Bioinformatics}, volume = {13}, number = {S5}, month = {April}, year = {2012}, } @Misc{daga-gputc10-accel, author = {Daga, Mayank and Feng, Wu-chun}, title = "{Accelerating Molecular Modeling using GPUs}", booktitle = {GPU Technology Conference}, address = {San Jose, California}, month = {September}, year = {2010}, } @InProceedings{daga-icpads11-archopt, author = { and and }, title = "{}", address = {}, month = {December}, year = {2011}, } @InProceedings{daga-mm-iccabs11, author = { and and }, title = "{}", address = {}, month = {February}, year = {2011}, } @InProceedings{daga-saahpc11-apu-efficacy, author = {Daga, Mayank and Aji, Ashwin and Feng, Wu-chun}, title = "{On the Efficacy of a Fused CPU+GPU Processor for Parallel Computing}", booktitle = {Symposium on Application Accelerators in High-Performance Computing}, address = {Knoxville, Tennessee, USA}, month = {July}, year = {2011}, } @Misc{daga-thesis-2011-arch-aw-mapping, author = {Mayank Daga}, title = "{Architecture-Aware Mapping and Optimization on Heterogeneous Computing Systems}", booktitle = {Virginia Tech}, month = {April}, year = {2011}, } @Misc{darling-bosc2005-mpiblast_talk, author = {Darling, Aaron E.}, title = "{mpiBLAST evolves: success, collaborations, and challenges}", booktitle = {Bioinformatics Open-Source Conference 2005 (BOSC'2005)}, month = {June}, year = {2005}, } @Misc{darling-csb2002-greendestiny_poster, author = {Darling, Aaron E. and Feng, Wu-chun}, title = "{BLASTing Off with Green Destiny}", booktitle = {IEEE Computer Society Bioinformatics Conference, (CSB}, address = {Palo Alto, California}, month = {August}, year = {2002}, } @InProceedings{darling-cwce2002-mpiblast, author = {Darling, Aaron E. and Carey, Lucas and Feng, Wu-chun}, title = "{The Design, Implementation, and Evaluation of mpiBLAST}", booktitle = {ClusterWorld Conference}, address = {San Jose, California}, month = {June}, year = {2003}, note = { Best Paper: Applications Track }, } @Misc{darling-sc2002-mpiblast_poster, author = {Darling, Aaron E. and Feng, Wu-chun}, title = "{mpiBLAST: Parallelization of BLAST for Computational Clusters}", booktitle = {SC 2002: High-Performance Networking and Computing Conference (SC2002)}, address = {Baltimore, Maryland}, month = {November}, year = {2002}, } @InProceedings{dash-claret-hpcc17, author = {Dash, Sajal and Verma, Anshuman and North, Chris and Feng, Wu-chun}, title = "{Portable Parallel Design of Weighted Multi-Dimensional Scaling for Real-Time Data Analysis}", booktitle = {IEEE High Performance Computing and Communications (HPCC)}, address = {Bangkok, Thailand}, month = {December}, year = {2017}, } @Misc{dash-dissertation-2020, author = {}, title = "{}", month = {June}, year = {2020}, } @Article{dash-iblast-plos2021, author = { and and and }, title = "{}", volume = {16}, number = {4}, month = {April}, year = {2021}, } @Article{dash-identifying-combinations-scientificreports2020, author = { and and and and }, title = "{}", volume = {10}, number = {1}, month = {February}, year = {2020}, } @Article{dash-multi-hit-comb-scientific-reports19, author = { and and and and and }, title = "{}", volume = {9}, number = {1}, month = {January}, year = {2019}, note = {}, } @InProceedings{dash-summit-carcinogenesis-ipdps2021, author = { and and and and }, title = "{}", address = {}, month = {May}, year = {2021}, } @InProceedings{datta-ccgrid2006-lambdagrid, author = {Datta, Pallab and Sharma, Sushant and Feng, Wu-chun}, title = "{A Feedback Mechanism for Network Scheduling in LambdaGrids}", booktitle = {6th IEEE/ACM Symposium on Cluster Computing and the Grid (CCGrid’06)}, address = {Singapore}, month = {May}, year = {2006}, } @InProceedings{datta-sc2006-lambdagrid, author = {Datta, Pallab and Feng, Wu-chun and Sharma, Sushant}, title = "{End-System Aware, Rate-Adaptive Protocol for Network Transport in LambdaGrid Environments}", booktitle = {ACM/IEEE SC|06: The International Conference on High-Performance Computing, Networking, Storage, and Analysis}, address = {Tampa, FL}, month = {November}, year = {2006}, } @Misc{delmundo-efficacy-shuffle-sc13, author = {del Mundo, Carlo and Feng, Wu-chun}, title = "{Enabling Efficient Intra-Warp Communication for Fourier Transforms in a Many-Core Architecture}", booktitle = {ACM/IEEE International Conference on High-Performance Computing, Networking, Storage, and Analysis (SC|13)}, address = {Denver, CO}, month = {November}, year = {2013}, } @InProceedings{delmundo-fft-cf14, author = {del Mundo, Carlo and Feng, Wu-chun}, title = "{Towards a Performance-Portable FFT Library for Heterogeneous Computing}", booktitle = {ACM International Conference on Computing Frontiers (CF)}, address = {Cagliari, Italy}, month = {May}, year = {2014}, } @InProceedings{delmundo-icc13-fft, author = {del Mundo, Carlo and Adhinarayanan, Vignesh and Feng, Wu-chun}, title = "{Accelerating Fast Fourier Transform for Wideband Channelization}", booktitle = {International Conference on Communications (ICC)}, address = {Budapest, Hungary}, month = {June}, year = {2013}, } @InProceedings{dutta-gpu-power-prediction-cf18, author = { and and }, title = "{}", address = {}, month = {May}, year = {2018}, } @InProceedings{elteir-icpads11-steammr, author = { and and and }, title = "{}", address = {}, month = {December}, year = {2011}, } @InProceedings{elteir-ieeecluster11-atomic-operations, author = {Elteir, Marwa and Lin, Heshan and Feng, Wu-chun}, title = "{Performance Characterization and Optimization of Atomic Operations on AMD GPUs}", booktitle = {IEEE Cluster 2011}, address = {Austin, TX, USA}, month = {September}, year = {2011}, } @InProceedings{engelhard-ipdps2004-flowcontrol, author = {Engelhart, Adam and Gardner, Mark K. and Feng, Wu-chun}, title = "{Re-Architecting Flow-Control Adaptation for Grid Environments}", booktitle = {18th IEEE International Parallel and Distributed Processing Symposium, (IPDPS'04)}, address = {Santa Fe, New Mexico}, month = {April}, year = {2004}, } @Article{faris-diswcommunication-omics11, author = {Faris, Jack and Kolker, Evelyne and Szalay, Alex and Bradlow, Leon and Deelman, Ewa and Feng, Wu-chun and Qiu, Judy and Russell, Donna and Stewart, Elizabeth and Kolker, Eugene}, title = "{Communication and Data-Intensive Science in the Beginning of the 21st Century}", journal = {OMICS A Journal of Integrative Biology}, volume = {15}, number = {4}, month = {April}, year = {2011}, } @Misc{feng-2006-machineroom_talk, author = {Feng, Wu-chun}, title = "{Global Climate Warming? Yes … In the Machine Room}", booktitle = {Clusters and Computational Grids for Scientific Computing}, month = {September}, year = {2006}, note = {(invited talk)}, } @Article{feng-acmqueue2003-efficient, author = {Feng, Wu-chun}, title = "{Making a Case for Efficient Supercomputing}", journal = {ACM Queue}, volume = {1}, number = {7}, month = {October}, year = {2003}, } @Misc{feng-bof-green500-sc20-talk, author = { and and and }, title = "{}", month = {November}, year = {2020}, } @InProceedings{feng-cbms04-radiology, author = {Feng, Wu-chun}, title = "{A Multimodal Interface for the Immediate Transcription of Radiology Dictation}", booktitle = {Computer-Based Medical Systems (CBMS)}, address = {Bethesda, MD, USA}, month = {June}, year = {2004}, } @InProceedings{feng-cluster2002-beowulf, author = {Feng, Wu-chun and Warren, Michael and Weigle, Eric}, title = "{The Bladed Beowulf: A Cost-Effective Alternative to Traditional Beowulfs}", booktitle = {IEEE International Conference on Cluster Computing (IEEE Cluster 2002)}, address = {Chicago, Illinois}, month = {September}, year = {2002}, } @InProceedings{feng-cncs1998-corba, author = {Feng, Wu-chun}, title = "{Extending CORBA for Soft Real-Time Applications}", booktitle = {International Conference on Networks & Communication Systems}, month = {May}, year = {1998}, note = {[Based on research performed at UIUC] (electronic version unavailable)}, } @InProceedings{feng-compsac1999-corba, author = {Feng, Wu-chun}, title = "{Dynamic Client-Side Scheduling in a Real-Time CORBA System}", booktitle = {23rd International Computer Software & Applications Conference (COMPSAC'99)}, address = {Phoenix, Arizona}, month = {October}, year = {1999}, note = {[Based on research performed at UIUC]}, } @Article{feng-computer2007-green500, author = {Feng, Wu-chun and Cameron, Kirk}, title = "{The Green500 List: Encouraging Sustainable Supercomputing}", journal = {IEEE Computer}, volume = {40}, number = {12}, month = {December}, year = {2007}, } @Article{feng-ctwatch2005-lowpower, author = {Feng, Wu-chun}, title = "{The Importance of Being Low Power in High-Performance Computing}", journal = {Cyberinfrastructure Technology Watch Quarterly (CTWatch Quarterly)}, volume = {1}, number = {3}, month = {August}, year = {2005}, } @Misc{feng-elililly2002-greendestiny_talk, author = {Feng, Wu-chun}, title = "{Green Destiny: A 240-Node Compute Cluster in One Cubic Meter}", booktitle = {Eli Lilly}, month = {September}, year = {2002}, note = {NCSA at the University of Illinois at Urbana-Champaign with a broadcast over the Access Grid, October 2002, Rocky Mountain Institute Data Charrette, February 2003}, } @Article{feng-elsevier-acce, author = {Feng, Wu-chun and Manocha, Dinesh}, title = "{High-Performance Computing Using Accelerators}", journal = {Parallel Computing}, volume = {33}, number = {10-11}, month = {November}, year = {2007}, } @InProceedings{feng-feasibility-hpec2020, author = { and and and and and }, title = "{}", address = {}, month = {September}, year = {2020}, } @InProceedings{feng-globecom2002-green, author = {Feng, Wu-chun and Kapadia, Apu C. and Thulasidasan, Sunil}, title = "{GREEN: Proactive Queue Management over a Best-Effort Network}", booktitle = {IEEE GlobeCom (GLOBECOM 2002)}, address = {Taipei, Taiwan}, month = {November}, year = {2002}, } @InProceedings{feng-green500list-year2, author = {Feng, Wu-chun and Lin, Heshan}, title = "{The Green500 List: Year Two}", booktitle = {IEEE International Symposium on Parallel and Distributed Processing, Workshops and Phd Forum (IPDPSW)}, month = {April}, year = {2010}, } @InProceedings{feng-hoti2005-toe, author = {Feng, Wu-chun and Balaji, Pavan and Baron, Chris and Bhuyan, Laxmi and Panda, Dhabaleswar}, title = "{Performance Characterization of a 10-Gigabit Ethernet TOE}", booktitle = {13th IEEE International Symposium on High-Performance Interconnects (Hot Interconnects)}, address = {Palo Alto, California}, month = {August}, year = {2005}, } @InProceedings{feng-hppac09-green500, author = { and }, title = "{}", address = {}, month = {May}, year = {2009}, } @InProceedings{feng-hppac2007-green, author = {Feng, Wu-chun and Ching, Avery and Hsu, Chung-hsing}, title = "{Green Supercomputing in a Desktop Box}", booktitle = {3rd IEEE Workshop on High-Performance, Power-Aware Computing (in conjunction with the 21st International Parallel and Distributed Processing Symposium (IPDPS))}, address = {Long Beach, California}, month = {March}, year = {2007}, } @InProceedings{feng-icccn2001-magnet, author = {Feng, Wu-chun and Hay, Jeffrey R. and Gardner, Mark K.}, title = "{MAGNeT: Monitor for Application-Generated Network Traffic}", booktitle = {10th International Conference on Computer Communication and Networking (ICCCN'01)}, address = {Scottsdale, Arizona}, month = {October}, year = {2001}, } @InProceedings{feng-icn2002-security, author = {Feng, Wu-chun and Al-Muhtadi, Jalal}, title = "{A General Security Infrastructure for Wireless Communication}", booktitle = {IEEE International Conference on Networks (ICN 2002)}, address = {Atlanta, Georgia}, month = {August}, year = {2002}, } @InProceedings{feng-icpe12-opencl-13-dwarfs, author = { and and and }, title = "{}", address = {}, month = {April}, year = {2012}, } @InProceedings{feng-icpp07-cpumiser, author = {Rong Ge and Xizhou Feng and Wu-chun Feng and Kirk Cameron}, title = "{CPU MISER: A Performance-Directed, Run-Time System for Power-Aware Clusters}", booktitle = {International Conference on Parallel Processing}, address = {Xi'an China}, month = {September}, year = {2007}, } @InProceedings{feng-icpp2000-tcpcongestion, author = {Feng, Wu-chun and Tinnakornsrisuphap, Peerapol}, title = "{The Adverse Impact of the TCP Congestion-Control Mechanism in Heterogeneous Computing Systems}", booktitle = {29th International Conference on Parallel Processing (ICPP'00)}, address = {Toronto, Canada}, month = {August}, year = {2000}, } @InProceedings{feng-icpp2002-beowulf, author = {Feng, Wu-chun and Warren, Michael and Weigle, Eric}, title = "{Honey, I Shrunk the Beowulf!}", booktitle = {International Conference on Parallel Processing 2002 (ICPP 2002)}, address = {Vancouver, Canada}, month = {August}, year = {2002}, } @Misc{feng-icpp2003-bioinfomagic_talk, author = {Feng, Wu-chun}, title = "{Green Destiny + mpiBLAST = Bioinfomagic}", booktitle = {10th International Conference on Parallel Computing}, month = {September}, year = {2003}, } @InProceedings{feng-icppmns1999-corba, author = {Feng, Wu-chun}, title = "{The Design of an Open Real-Time System Using CORBA}", booktitle = {1st International Workshop on Multimedia Network Systems (MNS'99)}, address = {Aizu, Japan}, month = {September}, year = {1999}, note = {[Based on research performed at UIUC]}, } @Article{feng-ieeec-g500list, author = {Feng, Wu-chun and Cameron, Kirk}, title = "{The Green500 List: Encouraging Sustainable Supercomputing}", journal = {IEEE Computer}, volume = {40}, number = {12}, month = {December}, year = {2007}, } @InProceedings{feng-ieeecc2004-greendestiny, author = {Feng, Wu-chun and Hsu, Chung-hsing}, title = "{The Origin and Evolution of Green Destiny}", booktitle = {IEEE Cool Chips VII: An International Symposium on Low-Power and High-Speed Chips}, address = {Yokohama, Japan}, month = {April}, year = {2004}, } @Article{feng-ieeetose1997-schedulingrts, author = {Feng, Wu-chun and Liu, Jane W. S.}, title = "{Algorithms for Scheduling Real-Time Tasks with Input Error and End-to-End Deadlines}", journal = {IEEE Transactions on Software Engineering}, volume = {23}, number = {2}, month = {February}, year = {1997}, note = {[Based on research performed at UIUC]}, } @InProceedings{feng-iom2009-nics, author = {Feng, Wu-chun and Balaji, Pavan and Singh, Ajeet}, title = "{Network Interface Cards as First-Class Citizens}", booktitle = {IEEE Workshop on the Influence of I/O on Microprocessor Architecture}, address = {Raleigh, NC}, month = {February}, year = {2009}, } @Misc{feng-ipdps2005-metric_talk, author = {Hsu, Chung-hsing and Feng, Wu-chun and Archuleta, Jeremy S.}, title = "{Towards Efficient Supercomputing: Choosing the Right Efficiency Metric}", booktitle = {IEEE International Parallel & Distributed Processing Symposium (IPDPS) Workshop on High-Performance, Power-Aware Computing}, month = {April}, year = {2005}, } @Misc{feng-ipdps2005-poweraware_talk, author = {Feng, Wu-chun}, title = "{The Evolution of Power-Aware, High-Performance Clusters: From the Datacenter to the Desktop}", booktitle = {IEEE International Parallel and Distributed Processing Symposium (IPDPS)}, month = {April}, year = {2005}, } @Misc{feng-isc2004-greendestiny_talk, author = {Feng, Wu-chun and Hsu, Chung-hsing}, title = "{Green Destiny and Its Evolving Parts}", booktitle = {Award Presentation for Innovative Supercomputer Architecture at the 18th International Supercomputer Conference}, month = {June}, year = {2004}, } @InProceedings{feng-iscas2010-gpusync, author = {Feng, Wu-chun and Xiao, Shucai}, title = "{To GPU Synchronize or Not GPU Synchronize?}", booktitle = {IEEE International Symposium on Circuits and Systems (ISCAS)}, address = {Paris, France}, month = {May}, year = {2010}, } @Article{feng-itpro-green, author = {Feng, Wu-chun and Feng, Xizhou and Ge, Rong}, title = "{Green Supercomputing Comes of Age}", journal = {IT Professional}, volume = {10}, number = {1}, month = {January}, year = {2008}, } @Article{feng-jgc2003-flowcontrol, author = {Feng, Wu-chun and Gardner, Mark K. and Fisk, Michael E. and Weigle, Eric}, title = "{Automatic Flow-Control Adaptation for Enhancing Network Performance in Computational Grids}", journal = {Journal of Grid Gomputing (inaugural issue)}, volume = {1}, number = {1}, month = {}, year = {2003}, } @Article{feng-jsc2002-magnet, author = {Feng, Wu-chun and Gardner, Mark K. and Hay, Jeffrey R.}, title = "{The MAGNeT Toolkit: Design, Evaluation, and Implementation}", journal = {Journal of Supercomputing}, volume = {23}, number = {1}, month = {August}, year = {2002}, } @Article{feng-jsc2002-packetspacing, author = {Feng, Annette C. and Kapadia, Apu C. and Feng, Wu-chun and Belford, Geneva G.}, title = "{Packet Spacing: An Enabling Mechanism for the Delivery of Multimedia Content in Computational Grids}", journal = {Journal of Supercomputing}, volume = {23}, number = {1}, month = {August}, year = {2002}, note = {(extended version)}, } @InProceedings{feng-lasci2001-packetspacing, author = {Feng, Annette C. and Feng, Wu-chun and Belford, Geneva G.}, title = "{Packet Spacing: An Enabling Mechanism for the Delivery of Multimedia Content in Computational Grids}", booktitle = {2nd Los Alamos Computer Science Institute Symposium (LACSI 2001)}, address = {Santa Fe, New Mexico}, month = {October}, year = {2001}, note = {(Invited for publication in Journal of Supercomputing)}, } @InProceedings{feng-milcom2002-security, author = {Feng, Wu-chun}, title = "{Securing Wireless Communication in Heterogeneous Environments}", booktitle = {IEEE Symposium on Military Communications (MILCOM 2002)}, address = {Los Angeles, California}, month = {October}, year = {2002}, note = {(electronic version unavailable)}, } @InProceedings{feng-msescience-radiology, author = {Feng, Wu-chun}, title = "{Real-Time Transcription of Radiology Dictation: A Case Study for Multimedia Tablet PCs}", booktitle = {Microsoft eScience Workshop}, address = {Baltimore, Maryland}, month = {October}, year = {2006}, } @Misc{feng-osu1999-niccitizen_talk, author = {Feng, Wu-chun and R. Minnich and Petrini, Fabrizio}, title = "{Network Interface Cards (NICs) as First-Class Citizens.}", booktitle = {Ohio State University}, month = {November}, year = {1999}, } @InProceedings{feng-parallel-adventure-ipdps2023-workshop, author = { and }, title = "{}", address = {}, month = {May}, year = {2023}, } @InProceedings{feng-parco2003-greendestiny, author = {Feng, Wu-chun}, title = "{Green Destiny + mpiBLAST = Bioinfomagic}", booktitle = {10th International Conference on Parallel Computing (ParCo)}, month = {September}, year = {2003}, } @InProceedings{feng-pfhsn2002-drs, author = {Feng, Wu-chun and Fisk, Michael E. and Gardner, Mark K. and Weigle, Eric}, title = "{Dynamic Right-Sizing: An Automated, Lightweight, and Scalable Technique for Enhancing Grid Performance}", booktitle = {7th International IEEE Workshop on Protocols for High Speed Networks (PfHSN 2002)}, address = {Berlin, Germany}, month = {April}, year = {2002}, } @InProceedings{feng-prog-in-snap-edupar16, author = {Feng, Annette and Feng, Wu-chun}, title = "{Parallel Programming with Pictures in a Snap!}", booktitle = {6th NSF/TCPP Workshop on Parallel and Distributed Computing Education (EduPar)}, address = {Chicago, Illinois, USA}, month = {May}, year = {2016}, } @Article{feng-psnap-jpdc17, author = {Feng, Annette and Gardner, Mark and Feng, Wu-chun}, title = "{Parallel Programming with Pictures is a Snap!}", journal = {Journal of Parallel and Distributed Computing}, volume = {105}, month = {January}, year = {2017}, } @InProceedings{feng-saint2003-renovegas, author = {Feng, Wu-chun and Vanichpun, Sarut}, title = "{Enabling Compatibility Between TCP Reno and TCP Vegas}", booktitle = {IEEE Symposium on Applications and the Internet (SAINT 2003)}, address = {Orlando, Florida}, month = {January}, year = {2003}, } @Misc{feng-sc2000-tcp_talk, author = {Feng, Wu-chun}, title = "{Is TCP an Adequate Protocol for High-Performance Computing Needs ?}", booktitle = {SC 2000: High-Performance Networking and Computing Conference (Panel at SC2000)}, month = {November}, year = {2000}, } @InProceedings{feng-sc2000-tcpgrid, author = {Feng, Wu-chun and Tinnakornsrisuphap, Peerapol}, title = "{The Failure of TCP in High-Performance Computational Grids}", booktitle = {SC 2000: High-Performance Networking and Computing Conference (SC2000)}, address = {Dallas, Texas}, month = {November}, year = {2000}, } @InProceedings{feng-sc2003-10gige, author = {Feng, Wu-chun and Hurwitz, Justin (Gus) and Newman, Harvey and Ravot, Sylvain and Cottrell, Les R. and Martin, Olivier and Coccetti, Fabrizio and Jin, Cheng and Wei, David and Low, Steven H.}, title = "{Optimizing 10-Gigabit Ethernet for Networks of Workstations, Clusters and Grids: A Case Study}", booktitle = {SC2003: High-Performance Networking and Computing Conference}, address = {Phoenix, Arizona}, month = {November}, year = {2003}, } @InProceedings{feng-snap-beyondblocks15, author = {Feng, Annette and Tilevich, Eli and Feng, Wu-chun}, title = "{Block-Based Programming Abstractions for Explicit Parallel Computing}", booktitle = {Blocks and Beyond: Lessons and Directions for First Programming Environments}, address = {Atlanta, GA, USA}, month = {October}, year = {2015}, note = {A VL/HCC 2015 Workshop.}, } @Misc{feng-temporal-data-mining-gpu-gems-2011, author = { and and and }, title = "{}", month = {February}, year = {2011}, note = {}, } @Article{feng-tools-env-ieeecomputer09.pdf, author = {Feng, Wu-chun and Balaji, Pavan}, title = "{Tools and Environments for Multi- and Many-Core Architectures}", journal = {IEEE Computer}, volume = {42}, number = {12}, month = {December}, year = {2009}, } @Misc{feng-visitors2004-greendestiny_talk, author = {Feng, Wu-chun}, title = "{Green Destiny: A 240-Node Compute Cluster in Five Square Feet}", booktitle = {IEEE Distinguished Visitors Program}, month = {October}, year = {2004}, note = {Invited Talk}, } @InProceedings{feng-wmdrtss1997-corba, author = {Feng, Wu-chun and Syyid, Umar, and Liu, Jane W. S.}, title = "{Providing for an Open Real-Time CORBA}", booktitle = {IEEE Workshop on Middleware for Distributed Real-Time Systems and Services}, month = {December}, year = {1997}, note = {[Based on research performed at UIUC]}, } @InProceedings{fisk-lasci2001-drs, author = {Fisk, Michael E. and Feng, Wu-chun}, title = "{Dynamic Right-Sizing in TCP}", booktitle = {2nd Annual Los Alamos Computer Science Institute Symposium (LACSI 2001)}, address = {Santa Fe, New Mexico}, month = {October}, year = {2001}, } @Misc{fisk-sc2001-drs_poster, author = {Fisk, Michael E. and Feng, Wu-chun}, title = "{Dynamic Right-Sizing: TCP Flow-Control Adaptation}", booktitle = {SC 2001: High-Performance Networking and Computing Conference (SC 2001)}, address = {Denver, Colorado}, month = {November}, year = {2001}, } @TechReport{fisk-techreport2000-tcpwindow, author = {Fisk, Michael E. and Feng, Wu-chun}, title = "{Dynamic Adjustment of TCP Window Sizes}", booktitle = {Los Alamos}, month = {}, year = {2000}, } @InProceedings{frachtenberg-srmcc2001-gangscheduling, author = {Frachtenberg, Eitan and Petrini, Fabrizio and Coll, Salvador and Feng, Wu-chun}, title = "{Gang Scheduling with Lightweight User-Level Communication}", booktitle = {Workshop on Scheduling and Resource Management for Cluster Computing (in conjunction with the ICPP01) (SRMCC 2001)}, address = {Valencia, Spain}, month = {September}, year = {2001}, } @Misc{ganesh-thesis-2008-high-perf-nw, author = {Ganesh Narayanaswamy}, title = "{On the Interaction of High-Performance Network Protocol Stacks with Multicore Architectures}", booktitle = {Virginia Tech}, month = {April}, year = {2008}, } @Misc{gans-pp06-signature_talk, author = {J. Gans and Feng, Wu-chun and M. Wolinsky}, title = "{Whole Genome, Physics-Based Sequence Alignment for Pathogen Signature Design}", booktitle = {12th SIAM Conference on Parallel Processing for Scientific Computing}, month = {February}, year = {2006}, } @InProceedings{gans-siampp06-pathogen, author = {Gans, Jason D. and Feng, Wu-chun and Wolinsky, Murray}, title = "{Whole Genome, Physics-Based Sequence Alignment for Pathogen Signature Design}", booktitle = {12th SIAM Conference on Parallel Processing for Scientific Computing}, address = {San Francisco, California}, month = {February}, year = {2006}, note = {(electronic version unavailable)}, } @InProceedings{gardner-ccgrid2003-magnet, author = {Gardner, Mark K. and Feng, Wu-chun and Broxton, Michael and Engelhart, Adam and Hurwitz, Justin (Gus)}, title = "{MAGNET: A Tool for Debugging, Analysis and Adaptation in Computing Systems}", booktitle = {3rd IEEE/ACM International Symposium on Cluster Computing and the Grid (CCGrid'2003)}, address = {Tokyo, Japan}, month = {May}, year = {2003}, } @Article{gardner-comcom2003-flowcontrol, author = {Gardner, Mark K. and Thulasidasan, Sunil and Feng, Wu-chun}, title = "{User-Space Auto-Tuning for TCP Flow Control in Computational Grids}", journal = {Computer Communications, Special Issue on Network Support for Grid Computing,}, volume = {27}, number = {14}, month = {September}, year = {2004}, } @Article{gardner-cu2cl-parco13, author = {Gardner, Mark and Sathre, Paul and Feng, Wu-chun and Martinez, Gabriel}, title = "{Characterizing the Challenges and Evaluating the Efficacy of a CUDA-to-OpenCL Translator}", journal = {Parallel Computing}, volume = {39}, number = {12}, month = {December}, year = {2013}, } @InProceedings{gardner-erts1999-scheduling, author = {Gardner, Mark K. and Liu, Jane W. S.}, title = "{Performance of Algorithms for Scheduling Real-Time Systems with Overrun and Overload}", booktitle = {11th Euromicro Conference on Real-Time Systems. (ERTS)}, address = {York, England}, month = {June}, year = {1999}, note = {[Based on research performed at UIUC]}, } @InProceedings{gardner-gw2004-globus, author = {Gardner, Mark K. and Deng, Wei and Markham, Stephen T. and Mendes, Celso L. and Feng, Wu-chun and Reed, Daniel A.}, title = "{A High-Fidelity Software Oscilloscope for Globus}", booktitle = {GlobusWorld 2004}, address = {San Francisco, California}, month = {January}, year = {2004}, } @InProceedings{gardner-hpdc2002-drsftp, author = {Gardner, Mark K. and Feng, Wu-chun and Fisk, Michael E.}, title = "{Dynamic Right-Sizing in FTP (drsFTP): An Automatic Technique for Enhancing Grid Performance}", booktitle = {IEEE Symposium on High-Performance Distributed Computing. (HPDC-2002)}, address = {Edinburgh, Scotland}, month = {July}, year = {2002}, } @InProceedings{gardner-icvci-hi-fi-monitoring, author = {Feng, Wu-chun and Vishwanath, Venkatram and Leigh, Jason and Gardner, Mark}, title = "{High-Fidelity Monitoring in Virtual Computing Environments}", booktitle = {International Conference on the Virtual Computing Initiative (ICVCI)}, address = {Research Triangle Park, NC}, month = {May}, year = {2007}, } @InProceedings{gardner-icvci-virtual_eco, author = {Gardner, Mark and Feng, Wu-chun}, title = "{Towards a Virtual Ecosystem for K-8 Education}", booktitle = {International Conference on the Virtual Computing Initiative (ICVCI)}, address = {Research Triangle Park, NC}, month = {May}, year = {2008}, } @InProceedings{gardner-icvci2009-eco, author = { and and and and and }, title = "{}", address = {}, month = {October}, year = {2009}, } @InProceedings{gardner-ipdps2003-muse, author = {Gardner, Mark K. and Broxton, Michael and Engelhart, Adam and Feng, Wu-chun}, title = "{MUSE: A Software Oscilloscope for Clusters and Grids}", booktitle = {17th IEEE International Parallel and Distributed Processing Symposium (IPDPS 2003)}, address = {Nice, France}, month = {April}, year = {2003}, } @InProceedings{gardner-iticse2010-k12, title = {Broadening Accessibility to Computer Science for K-12 Education}, booktitle = {15th Annual Conference on Innovation and Technology in Computer Science Education}, year = {2010}, month = {June}, address = {Ankara, Turkey}, author = {Gardner, Mark K. and Feng, Wu-Chun}, } @InProceedings{gardner-pam2002-magnet, author = {Gardner, Mark K. and Feng, Wu-chun and Hay, Jeffrey R.}, title = "{Monitoring Protocol Traffic with a MAGNeT}", booktitle = {Passive & Active Measurement Workshop (PAM2002)}, address = {Fort Collins, Colorado}, month = {March}, year = {2002}, } @InProceedings{gardner-sc2006-adhocgrid, author = { and and and and }, title = "{}", address = {}, month = {November}, year = {2006}, note = {}, } @InProceedings{gardner-tacas1999-stochastic, author = {Gardner, Mark K. and Liu, Jane W. S.}, title = "{Analyzing Stochastic Fixed-Priority Real-Time Systems}", booktitle = {5th International Conference on Tools and Algorithms for the Construction and Analysis of Systems, Joint European Conferences on Theory and Practice of Software}, month = {March}, year = {1999}, note = {Also in Lecture Notes in Computer Science, Vol. 1579}, } @Misc{gardner-thesis1999-rts, author = {Gardner, Mark K.}, title = "{Probabilistic Analysis and Scheduling of Critical Soft Real-Time Systems}", booktitle = {University of Illinois}, month = {September}, year = {1999}, note = {[Based on research performed at UIUC]}, } @InProceedings{ge-icpp2007-miser, author = {Ge, Rong and Feng, Xizhou and Feng, Wu-chun and Cameron, Kirk W.}, title = "{CPU MISER: A Performance-Directed, Run-Time System for Power-Aware Clusters}", booktitle = {36th International Conference on Parallel Processing}, address = {Xian, China}, month = {September}, year = {2007}, } @Article{gilbert-sgs10-terabase, author = {Gilbert, Jack and Meyer, Folker and Antonopoulos, Dion and Balaji, Pavan and Brown, C. Titus and Brown, Christopher T. and Desai, Narayan and Eisen, Jonathan A. and Evers, Dirk and Field, Dawn and Feng, Wu-chun and Huson, Daniel and Jansson, Janet and Knight, Rob and Knight, James and Kolker, Eugene and Konstantindis, Kostas and Kostka, Joel and Kyrpides, Nikos and Mackelprang, Rachel and McHardy, Alice and Quince, Christopher and Raes, Jeroen and Sczyrba, Alexander and Shade, Ashley and Stevens, Rick}, title = "{The Terabase Metagenomics Workshop and the Vision of an Earth Microbiome Project}", journal = {Standards in Genomic Sciences}, volume = {3}, number = {3}, month = {December}, year = {2010}, } @Misc{goddard-thesis-2009-parallel-seq-search, author = {Goddard, Christopher Joseph}, title = "{Analysis and Abstraction of Parallel Sequence Search}", booktitle = {Virginia Tech}, month = {September}, year = {2007}, } @InProceedings{goel-computecovid-icpp2021, author = { and and and and and }, title = "{}", address = {}, month = {August}, year = {2021}, } @InProceedings{gondhalekar-exploring-datasets-fpl2020, author = {Gondhalekar, Atharva and Feng, Wu-chun}, title = "{Exploring FPGA Optimizations in OpenCL for Breadth-First Search on Sparse Graph Datasets}", booktitle = {30th International Conference on Field-Programmable Logic and Applications}, address = {Gothenburg, Sweden}, month = {September}, year = {2020}, } @InProceedings{harb-sync-kernel-mascots16, author = {Harb, Islam and Feng, Wu-chun}, title = "{Characterizing Performance and Power Towards Efficient Synchronization of GPU Kernels}", booktitle = {IEEE International Symposium on Modeling, Analysis and Simulation of Computer and Telecommunication Systems (MASCOTS)}, address = {London, England}, month = {September}, year = {2016}, } @InProceedings{hassan-c2d-wave-hpec19, author = { and and }, title = "{}", address = {}, month = {September}, year = {2019}, note = {}, } @InProceedings{hassan-fpga-opt-irr-opencl-reconfig18, author = {Hassan, Mohamed W. and Helal, Ahmed E. and Athanas, Peter M. and Feng, Wu-chun and Hanafy, Yasser Y.}, title = "{Exploring FPGA-specific Optimizations for Irregular OpenCL Applications}", booktitle = {International Conference on Reconfigurable Computing and FPGAs (ReConFig)}, address = {Cancun, Mexico}, month = {December}, year = {2018}, } @InProceedings{hay-als2001-magnet, author = {Hay, Jeffrey R. and Feng, Wu-chun and and M. K. Gardner}, title = "{Capturing Network Traffic with a MAGNeT}", booktitle = {5th Annual Linux Showcase and Conference (ALS'01)}, address = {Oakland, California}, month = {November}, year = {2001}, note = {SC2001 Pamphlet LA-UR 01-5656: PDF}, } @InProceedings{helal-automatch-iiswc17, author = {Helal, Ahmed E. and Feng, Wu-chun and Jung, Changhee and Hanafy, Yasser Y.}, title = "{AutoMatch: An Automated Framework for Relative Performance Estimation and Workload Distribution on Heterogeneous HPC Systems}", booktitle = {IEEE International Symposium on Workload Characterization (IISWC)}, address = {Seattle, WA}, month = {October}, year = {2017}, } @InProceedings{helal-commanalyzer-hpdc18, author = {Helal, Ahmed E. and Jung, Changhee and Feng, Wu-chun and Hanafy, Yasser Y.}, title = "{CommAnalyzer: Automated Estimation of Communication Cost and Scalability on HPC Clusters from Sequential Code}", booktitle = {27th International Symposium on High-Performance Parallel and Distributed Computing (ACM HPDC 2018)}, address = {Tempe, Arizona, USA}, month = {June}, year = {2018}, } @Misc{helal-dissertation-2019, author = {}, title = "{}", month = {December}, year = {2019}, } @InProceedings{helal-metamorph-sc16, author = {Helal, Ahmed E. and Sathre, Paul and Feng, Wu-chun}, title = "{MetaMorph: A Library Framework for Interoperable Kernels on Multi- and Many-core Clusters}", booktitle = {IEEE/ACM International Conference for High Performance Computing, Networking, Storage and Analysis (Supercomputing)}, address = {Salt Lake City, Utah, USA}, month = {November}, year = {2016}, } @InProceedings{helal-sparse-solvers-pact19, author = {Helal, Ahmed E. and Aji, Ashwin M. and Chu, Michael L. and Beckmann, Bradford M. and Feng, Wu-chun}, title = "{Adaptive Task Aggregation for High-Performance Sparse Solvers on GPUs}", booktitle = {28th International Conference on Parallel Architectures and Compilation Techniques}, address = {Seattle, WA}, month = {September}, year = {2019}, } @Misc{herrera-acp-aapm2020, author = {Herrera, Isaiah and Mandke, Prathamesh and Feng, Wu-chun and Cao, Guohua}, title = "{A Deep-Learning Neural Network Based Reconstruction Algorithm for Sparse-View CT}", booktitle = {Joint American Association of Physicists in Medicine | Canadian Organization of Medical Physicists Annual Scientific Meeting}, address = {Vancouver, British Columbia, Canada}, month = {July}, year = {2020}, } @InProceedings{hou-aspas-ics15, author = {Hou, Kaixi and Wang, Hao and Feng, Wu-chun}, title = "{ASPaS: A Framework for Automatic SIMDization of Parallel Sorting on x86-based Many-core Processors}", booktitle = {29th ACM International Conference on Supercomputing}, address = {Newport Beach, California, USA}, month = {June}, year = {2015}, } @Article{hou-auto-vec-tpds18, author = {Hou, Kaixi and Wang, Hao and Feng, Wu-chun}, title = "{A Framework for the Automatic Vectorization of Parallel Sort on x86-based Processors}", journal = {IEEE Transactions on Parallel and Distributed Systems}, volume = {29}, number = {5}, month = {May}, year = {2018}, } @Misc{hou-dissertation-2018, author = {}, title = "{}", month = {May}, year = {2018}, } @InProceedings{hou-fast-segment-ics17, author = {Hou, Kaixi and Liu, Weifeng and Wang, Hao and Feng, Wu-chun}, title = "{Fast Segmented Sort on GPUs}", booktitle = {31st ACM International Conference on Supercomputing}, address = {Chicago, IL}, month = {June}, year = {2017}, } @InProceedings{hou-mic-ecosystem-p2s214, author = {Hou, Kaixi and Wang, Hao and Feng, Wu-chun}, title = "{Delivering Parallel Programmability to the Masses via the Intel MIC Ecosystem: A Case Study}", booktitle = {7th International Workshop on Parallel Programming Models and Systems Software for High-End Computing (P2S2)}, address = {Minneapolis, Minnesota}, month = {September}, year = {2014}, } @InProceedings{hou-simd-framework-ipdps16, author = {Hou, Kaixi and Wang, Hao and Feng, Wu-chun}, title = "{AAlign: A SIMD Framework for Pairwise Sequence Alignment on x86-based Multi- and Many-core Processors}", booktitle = {IEEE International Parallel and Distributed Processing Symposium (IPDPS)}, address = {Chicago, IL, USA}, month = {May}, year = {2016}, } @InProceedings{hou-spmv-ashes17, author = {Hou, Kaixi and Feng, Wu-chun and Che, Shuai}, title = "{Auto-Tuning Strategies for Parallelizing Sparse Matrix-Vector (SpMV) Multiplication on Multi- and Many-Core Processors}", booktitle = {7th International Workshop on Accelerators and Hybrid Exascale Systems (AsHES)}, address = {Orlando, Florida}, month = {May}, year = {2017}, } @InProceedings{hou-stencils-cf17, author = {Hou, Kaixi and Wang, Hao and Feng, Wu-chun}, title = "{GPU-UniCache: Automatic Code Generation of Spatial Blocking for Stencils on GPUs}", booktitle = {Proceedings of the ACM Computing Frontiers}, address = {Siena, Italy}, month = {May}, year = {2017}, } @InProceedings{hou-wavefront-ipdps18, author = {Hou, Kaixi and Wang, Hao and Feng, Wu-chun and Vetter, Jeffrey S. and Lee, Seyong}, title = "{Highly Efficient Compensation-based Parallelism for Wavefront Loops on GPUs}", booktitle = {32th IEEE International Parallel and Distributed Processing Symposium (IPDPS)}, address = {Vancouver, British Columbia, Canada}, month = {May}, year = {2018}, } @InProceedings{hsu-cluster2005-power_feasibility, author = {Hsu, Chung-hsing and Feng, Wu-chun}, title = "{A Feasibility Analysis of Power Awareness in Commodity-Based High-Performance Clusters}", booktitle = {7th IEEE International Conference on Cluster Computing (CLUSTER}, address = {Boston, Massachusetts}, month = {September}, year = {2005}, } @TechReport{hsu-feb2005-dvs, author = {Hsu, Chung-hsing and Feng, Wu-chun}, title = "{When Discreteness Meets Continuity: Energy-Optimal DVS Scheduling Revisited}", booktitle = {Los Alamos}, month = {February}, year = {2005}, } @InProceedings{hsu-hppac2005-metric, author = {Hsu, Chung-hsing and Feng, Wu-chun and Archuleta, Jeremy S.}, title = "{Towards Efficient Supercomputing: A Quest for the Right Metric}", booktitle = {1st IEEE Workshop on High-Performance, Power-Aware Computing (in conjunction with the 19th International Parallel and Distributed Processing Symposium (IPDPS))}, address = {Denver, Colorado}, month = {April}, year = {2005}, note = {Presentation}, } @InProceedings{hsu-lci2005-overheating, author = {Hsu, Chung-hsing and Feng, Wu-chun}, title = "{Reducing Overheating-Induced Failures via Performance-Aware CPU Power Management}", booktitle = {6th International Conference on Linux Clusters: The HPC Revolution 2005}, month = {April}, year = {2005}, } @Article{hsu-lncs2005-voltagescaling, author = {Hsu, Chung-hsing and Feng, Wu-chun}, title = "{Effective Dynamic Voltage Scaling through CPU-Boundedness Detection}", journal = {Lecture Notes in Computer Science}, month = {February}, year = {2005}, note = {(This paper is an extended version of a paper that appeared in 4th IEEE/ACM Workshop on Power-Aware Computer Systems in conjunction with the 37th IEEE/ACM International Symposium on Microarchitecture, Portland, OR, December 2004.)}, } @InProceedings{hsu-pldi2003-cpuenergy, author = {Hsu, Chung-hsing and Kremer, Ulrich}, title = "{The Design, Implementation, and Evaluation of a Compiler Algorithm for CPU Energy Reduction}", booktitle = {PLDI 2003: ACM SIGPLAN Conference on Programming Language Design and Implementation}, month = {June}, year = {2003}, } @InProceedings{hsu-sc2005-powerruntime, author = {Hsu, Chung-hsing and Feng, Wu-chun}, title = "{A Power-Aware Run-Time System for High-Performance Computing}", booktitle = {ACM/IEEE SC2005: The International Conference on High-Performance Computing, Networking, and Storage}, address = {Seattle, Washington}, month = {November}, year = {2005}, } @InProceedings{huang-ccgrid09-energy, author = {Huang, Song and Feng, Wu-chun}, title = "{Energy-Efficient Cluster Computing via Accurate Workload Characterization}", booktitle = {9th IEEE International Symposium on Cluster Computing and the Grid (CCGrid)}, address = {Shanghai, China}, month = {May}, year = {2009}, } @InProceedings{huang-hppac08-ixp, author = {Huang, Song and Luo, Yan and Feng, Wu-chun}, title = "{Modeling and Analysis of Power in Multicore Network Processors}", booktitle = {4th IEEE Workshop on High-Performance, Power-Aware Computing (in conjunction with the 22nd International Parallel and Distributed Processing Symposium (IPDPS))}, address = {Miami, Florida, USA}, month = {April}, year = {2008}, } @InProceedings{huang-hppac09-gpu, author = {Huang, Song and Xiao, Shucai and Feng, Wu-chun}, title = "{On the Energy Efficiency of Graphics Processing Units for Scientific Computing}", booktitle = {5th IEEE Workshop on High-Performance, Power-Aware Computing (in conjunction with the 23rd International Parallel and Distributed Processing Symposium (IPDPS))}, address = {Rome, Italy}, month = {June}, year = {2009}, } @InProceedings{hurwitz-hoti2003-10gige, author = {Hurwitz, Justin (Gus) and Feng, Wu-chun}, title = "{Initial End-to-End Performance Evaluation of 10-Gigabit Ethernet}", booktitle = {IEEE Hot Interconnects: A Symposium on High-Performance Interconnects}, address = {Palo Alto, California}, month = {August}, year = {2003}, } @Article{hurwitz-ieeemicro2004-10gige, author = {Hurwitz, Justin (Gus) and Feng, Wu-chun}, title = "{End-to-End Performance of 10-Gigabit Ethernet on Commodity Systems}", journal = {IEEE Micro}, volume = {24}, number = {1}, month = {January}, year = {2004}, } @Article{hurwitz-jpdc2005-mpi10gige, author = {Hurwitz, Justin (Gus) and Feng, Wu-chun}, title = "{Analyzing MPI Performance over 10-Gigabit Ethernet}", journal = {Journal of Parallel and Distributed Computing, Special Issue: Design and Performance of Networks for Super-, Cluster-, and Grid-Computing}, volume = {65}, number = {10}, month = {October}, year = {2005}, } @InProceedings{jha-grappel-bcb2023, author = { and }, title = "{}", address = {}, month = {September}, year = {2023}, } @InProceedings{ji-hpcc12-dma-assisted, author = {Ji, Feng and Aji, Ashwin M. and Dinan, James and Buntinas, Darius and Balaji, Pavan and Thakur, Rajeev and Feng, Wu-chun and Ma, Xiaosong}, title = "{DMA-Assisted, Intranode Communication in GPU Accelerated Systems}", booktitle = {14th IEEE International Conference on High Performance Computing and Communications}, address = {Liverpool, UK}, month = {June}, year = {2012}, } @InProceedings{jing-ccgrid13-bwa, author = {Zhang, Jing and Lin, Heshan and Balaji, Pavan and Feng, Wu-chun}, title = "{Optimizing Burrows-Wheeler Transform-Based Sequence Alignment on Multicore Architectures}", booktitle = {13th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGrid)}, address = {Delft, Netherlands}, month = {May}, year = {2013}, } @InProceedings{kalim-globecom13-cascadedtcp, author = {Kalim, Umar and Gardner, Mark and Brown, Eric and Feng, Wu-chun}, title = "{Cascaded TCP: Applying Pipelining to TCP for Efficient Communication over Wide-Area Networks}", booktitle = {IEEE Global Communications Conference (GLOBECOM)}, address = {Atlanta, GA, USA}, month = {December}, year = {2013}, } @InProceedings{kalim-icccn13-vmmigration, author = {Kalim, Umar and Gardner, Mark K. and Brown, Eric and Feng, Wu-chun}, title = "{Seamless Migration of Virtual Machines Across Networks}", booktitle = {International Conference on Computer Communications and Networks (ICCCN)}, address = {Nassau, Bahamas}, month = {July}, year = {2013}, } @InProceedings{kalim-pfldnet2010-ibo, author = {Kalim, Umar and Brown, Eric and Gardner, Mark and Feng, Wu-chun}, title = "{Enabling Renewed Innovation in TCP by Establishing an Isolation Boundary"}, booktitle = {8th International Workshop on Protocols for Future, Large-Scale and Diverse Network Transports (PFLDNeT)}, address = {Lancaster, Pennsylvania}, month = {November}, year = {2010}, } @InProceedings{kalim-resilience-mpi-ftxs, author = {Kalim, Umar and Gardner, Mark K. and Feng, Wu-chun}, title = "{A Non-Invasive Approach for Realizing Resilience in MPI}", booktitle = {7th Workshop on Fault Tolerance for HPC at eXtreme Scale (FTXS), in conjunction with the 26th ACM Symposium on High-Performance Parallel and Distributed Computing}, address = {Washington DC}, month = {June}, year = {2017}, } @Misc{kalim-sc12-ctcp-poster, author = {Kalim, Umar and Gardner, Mark and Brown, Eric and Feng, Wu-chun}, title = "{Cascaded TCP: Big Throughput for Big Data Applications in Distributed HPC}", booktitle = {ACM/IEEE International Conference for High-Performance Computing, Networking, Storage and Analysis (SC)}, address = {Salt Lake City, Utah}, month = {November}, year = {2012}, } @InProceedings{kalim-slim-ancs17, author = {Kalim, Umar and Gardner, Mark K. and Brown, Eric J. and Feng, Wu}, title = "{SLIM: Enabling Transparent Extensibility and Dynamic Configuration via Session-Layer Abstractions}", booktitle = {ACM/IEEE Symposium on Architectures for Networking and Communications Systems (ANCS)}, address = {Beijing, China}, month = {May}, year = {2017}, } @InProceedings{kapadia-icdcs2001-packetspacing, author = {Kapadia, Apu C. and Feng, Annette C. and Feng, Wu-chun.}, title = "{The Effects of Inter-Packet Spacing on the Delivery of Multimedia Content}", booktitle = {21st International Conference on Distributed Computing Systems (ICDCS'01)}, address = {Scottsdale, Arizona}, month = {April}, year = {2001}, } @TechReport{kapadia-techreport2002-green, author = {Kapadia, Apu C. and Thulasidasan, Sunil and Feng, Wu-chun}, title = "{GREEN+IDMAPS: A Practical Solution for Ensuring Fairness in a Biased Internet}", booktitle = {Los Alamos}, month = {}, year = {2002}, note = {(electronic version unavailable)}, } @TechReport{kapadia-techreport2003-green, author = {Kapadia, Apu C. and Feng, Wu-chun and R. Campbell}, title = "{GREEN: A Practical Solution for Ensuring Fairness in a Best-Effort Network}", booktitle = {Los Alamos}, month = {}, year = {2003}, } @InProceedings{kasparian-3d-ddnet-iccabs2023, author = { and and }, title = "{}", address = {}, month = {December}, year = {2023}, } @Article{kolken-omics-studies-omics17, author = {Eugene, Kolker and Vural, Özdemir and Lennart, Martens and William, Hancock and Feng, Wu-Chun and et al}, title = "{Toward More Transparent and Reproducible Omics Studies Through a Common Metadata Checklist and Data Publications}", journal = {OMICS: A Journal of Integrative Biology}, volume = {18}, number = {1}, month = {January}, year = {2014}, } @InProceedings{krommydas-auto-parallelizaton-code-generation-icpp18, author = {Krommydas, Konstantinos and Sathre, Paul and Sasanka, Ruchira and Feng, Wu-chun}, title = "{A Framework for Auto-Parallelization and Code Generation: An Integrative Case Study with Legacy FORTRAN Codes}", booktitle = {47th International Conference on Parallel Processing (ICPP)}, address = {Eugene, OR}, month = {August}, year = {2018}, } @InProceedings{krommydas-bridging-asap16, author = {Krommydas, Konstantinos and Sasanka, Ruchira and Feng, Wu-chun}, title = "{Bridging the FPGA Programmability-Portability Gap via Automatic OpenCL Code Generation and Tuning}", booktitle = {IEEE International Conference on Application-Specific Systems, Architectures and Processors (ASAP)}, address = {London, England}, month = {July}, year = {2016}, } @InProceedings{krommydas-bridging-fccm16-paper, author = {Krommydas, Konstantinos and Helal, Ahmed and Verma, Anshuman and Feng, Wu-chun}, title = "{Bridging the Performance-Programmability Gap for FPGAs via OpenCL: A Case Study with OpenDwarfs. (Poster Paper, see "Posters" section for poster)}", booktitle = {24th IEEE International Symposium on Field-Programmable Custom Computing Machines}, address = {Washington, DC}, month = {May}, year = {2016}, } @InProceedings{krommydas-cblast-bicob15, author = {Feng, Wu-chun and Krommydas, Konstantinos and Zhang, Liqing}, title = "{CentroidBLAST: Accelerating Sequence Search via Clustering}", booktitle = {7th International Conference on Bioinformatics and Computational Biology}, address = {Honolulu, Hawaii}, month = {March}, year = {2015}, } @InProceedings{krommydas-glaf-icpp15, author = {Krommydas, Konstantinos and Sasanka, Ruchira and Feng, Wu-chun}, title = "{GLAF: A Visual Programming and Auto-Tuning Framework for Parallel Computing}", booktitle = {International Conference on Parallel Processing}, address = {Beijing, China}, month = {September}, year = {2015}, } @InProceedings{krommydas-icme11-avs-decoder, author = {Krommydas, Konstantinos and Antonopoulos, Christos D. and Bellas, Nikolaos and Feng, Wu-chun}, title = "{AVS Video Decoder on Multicore Systems: Optimizations and Tradeoffs}", booktitle = {IEEE International Conference on Multimedia and Expo (ICME)}, address = {Barcelona, Spain}, month = {July}, year = {2011}, } @InProceedings{krommydas-opendwarfs-asap14, author = {Krommydas, Konstantinos and Feng, Wu-chun and Owaida, Muhsen and Antonopoulos, Christos D. and Bellas, Nikolaos}, title = "{On the Characterization of OpenCL Dwarfs on Fixed and Reconfigurable Platforms}", booktitle = {IEEE International Conference on Application-Specific Systems, Architectures and Processors (ASAP)}, address = {Zurich, Switzerland}, month = {June}, year = {2014}, note = { Best Paper Finalist}, } @Article{krommydas-opendwarfs-signproc-15, author = {Krommydas, Konstantinos and Feng, Wu-chun and Antonopoulos, Christos D. and Bellas, Nikolaos}, title = "{OpenDwarfs: On the Characterization of Computation and Communication Patterns on Fixed and Reconfigurable Architectures}", journal = {Journal of Signal Processing Systems}, month = {October}, year = {2015}, } @Misc{krommydas-portability-opencl-icpads13, author = {Krommydas, Konstantinos and Owaida, Muhsen and Antonopoulos, Christos D. and Bellas, Nikolaos and Feng, Wu-chun}, title = "{On the Portability of the OpenCL Dwarfs on Fixed and Reconfigurable Parallel Platforms}", booktitle = {19th IEEE International Conference on Parallel and Distributed Systems (ICPADS 2013)}, address = {Seoul, Korea}, month = {December}, year = {2013}, } @InProceedings{krommydas-programmability-icpads13, author = {Krommydas, Konstantinos and Scogland, Thomas R.W. and Feng, Wu-chun}, title = "{On the Programmability and Performance of Heterogeneous Platforms}", booktitle = {19th IEEE International Conference on Parallel and Distributed Systems (ICPADS 2013)}, address = {Seoul, Korea}, month = {December}, year = {2013}, } @Misc{krommydas-thesis-2017-heterogeneous-comp, author = {Krommydas, Konstantinos}, title = "{Towards Enhancing Performance, Programmability, and Portability in Heterogeneous Computing}", booktitle = {Virginia Tech}, month = {May}, year = {2017}, } @InProceedings{krommydas_telescoping_hipc16, author = {Krommydas, Konstantinos and Feng, Wu-chun}, title = "{Telescoping Architectures: Evaluating Next-Generation Heterogeneous Computing}", booktitle = {23rd IEEE International Conference on High Performance Computing}, address = {Hyderabad, India}, month = {December}, year = {2016}, } @InProceedings{kumar-hipc2008-flow, author = {Kumar, Mithilesh and Chaube, Vineeta and Balaji, Pavan and Feng, Wu-Chun and Jin, Hyun-Wook}, title = "{Making a Case for Proactive Flow Control in Optical Circuit-Switched Networks}", booktitle = {15th International Conference on High-Performance Computing (HiPC)}, address = {Bangalore, India}, month = {December}, year = {2008}, } @InProceedings{lama-icdcs13-pvocl, author = {Lama, Palden and Li, Yan and Aji, Ashwin M. and Balaji, Pavan and Dinan, James and Xiao, Shucai and Zhang, Yunquan and Feng, Wu-chun and Thakur, Rajeev and Zhou, Xiaobo}, title = "{pVOCL: Power-Aware Dynamic Placement and Migration in Virtualized GPU Environments}", booktitle = {33rd International Conference on Distributed Computing Systems}, address = {Philadelphia, USA}, month = {July}, year = {2013}, } @InProceedings{lee-isc12-fusion, author = {Lee, Kenneth and Lin, Heshan and Feng, Wu-chun}, title = "{Performance Characterization of Data-Intensive Kernels on AMD Fusion Architectures}", booktitle = {International Supercomputing Conference (ISC)}, address = {Hamburg, Germany}, month = {June}, year = {2012}, } @Misc{lee-sc2011-fusion.pdf, author = {Lee, Kenneth and Lin, Heshan and Feng, Wu-chun}, title = "{Characterizing the Impact of Memory-Access Techniques on AMD Fusion}", booktitle = {ACM/IEEE SC|11: The International Conference on High-Performance Computing, Networking, Storage, and Analysis}, address = {Seattle, Washington, USA}, month = {November}, year = {2011}, } @Misc{lee-thesis-2012-characterization, author = {Kenneth Lee}, title = "{Characterization and Exploitation of GPU Memory Systems}", booktitle = {Virginia Tech}, month = {October}, year = {2012}, } @Article{lin-cc11-reliable-mapreduce, author = {Lin, Heshan and Ma, Xiaosong and Feng, Wu-chun}, title = "{Reliable MapReduce Computing on Opportunistic Resources}", journal = {Cluster Computing}, month = {February}, year = {2011}, } @InProceedings{lin-hpdc10-moon, author = {Lin, Heshan and Ma, Xiaosong and Archuleta, Jeremy and Feng, Wu-chun and Gardner, Mark and Zhang, Zhe}, title = "{MOON: MapReduce On Opportunistic eNvironments}", booktitle = {19th ACM International Symposium on High Performance Distributed Computing}, address = {Chicago, Illinois}, month = {June}, year = {2010}, note = { Selected as one of the 20 best papers from HPDC 1992--2012.}, } @Article{lin-ieeenetwork2005-fasttcp, author = {Jin, Cheng and Wei, David and Low, Steven H. and Buhrmaster, Gary and Bunn, Julian and Choe, Hyojeong D. and Cottrell, Les R. and Doyle, John C. and Feng, Wu-chun and Martin, Oliver and Newman, Harvey and Paganini, Fernando and Ravot, Sylvian and Singh, Suresh}, title = "{FAST TCP: From Theory to Experiments}", journal = {IEEE Network}, volume = {19}, number = {1}, month = {January}, year = {2005}, } @InProceedings{lin-ipdps2005-parallelblast, author = {Lin, Heshan and Ma, Xiaosong and Chandramohan, Praveen and Geist, Al and Samatova, Nagiza}, title = "{Efficient Data Access for Parallel BLAST}", booktitle = {IEEE International Parallel and Distributed Processing Symposium}, address = {Denver, Colorado}, month = {April}, year = {2005}, } @Misc{lin-pp06-datahandling_talk, author = {Lin, Heshan and Ma, Xiaosong and Feng, Wu-chun and A. Geist and N. Samatova}, title = "{Efficient Data Handling in Comparative Genome Analysis Applications}", booktitle = {12th SIAM Conference on Parallel Processing for Scientific Computing}, month = {February}, year = {2006}, } @InProceedings{lin-reconfig11-fft, author = {Pereira, Karl and Athanas, Peter and Lin, Heshan and Feng, Wu-chun}, title = "{Spectral Method Characterization on FPGA and GPU Accelerators}", booktitle = {International Conference on Reconfigurable Computing and FPGAs (ReConFig)}, address = {Cancun, Mexico}, month = {November}, year = {2011}, } @InProceedings{lin-sc08-bgp, author = {Lin, Heshan and Balaji, Pavan and Poole, Ruth and Sosa, Carlos and Ma, Xiaosong and Feng, Wu-chun}, title = "{Massively Parallel Genomic Sequence Search on the Blue Gene/P Architecture}", booktitle = {ACM/IEEE SC|08: The International Conference on High-Performance Computing, Networking, Storage, and Analysis}, address = {Austin, Texas}, month = {November}, year = {2008}, } @InProceedings{lin-siampp06-genome, author = {Lin, Heshan and Ma, Xiaosong and Feng, Wu-chun and Geist, Al and Samatova, Nagiza}, title = "{Efficient Data Handling in Comparative Genome Analysis Applications}", booktitle = {12th SIAM Conference on Parallel Processing for Scientific Computing}, address = {San Francisco, California}, month = {February}, year = {2006}, note = {(electronic version unavailable)}, } @Article{lin-tpds10-mpiblast, author = {Lin, Heshan and Ma, Xiaosong and Feng, Wu-chun and Samatova, Nagiza}, title = "{Coordinating Computation and I/O in Massively Parallel Sequence Search}", journal = {IEEE Transactions on Parallel and Distributed Systems}, volume = {PP}, number = {99}, month = {May}, year = {2010}, } @InProceedings{martinez-icpads11-cu2cl, author = {Martinez, Gabriel and Gardner, Mark and Feng, Wu-chun}, title = "{CU2CL: A CUDA-to-OpenCL Translator for Multi- and Many-Core Architectures}", booktitle = {17th IEEE International Conference on Parallel and Distributed Systems}, address = {Tainan, Taiwan}, month = {December}, year = {2011}, } @Misc{martinez-sc08-vm, author = {Martinez, Gabriel}, title = "{Characterizing and Optimizing Virtualization Overhead for Portable High-performance Networking}", booktitle = {ACM/IEEE SC|08: The International Conference on High-Performance Computing, Networking, Storage, and Analysis}, address = {Austin, Texas, USA}, month = {November}, year = {2008}, } @Misc{martinez-thesis-2011-cu2cl, author = {Gabriel Martinez}, title = "{CU2CL: A CUDA-to-OpenCL Translator for Multi- and Many-Core Architectures}", booktitle = {Virginia Tech}, month = {July}, year = {2011}, } @InProceedings{marwa-icpads10-mapreduce, author = {Elteir, Marwa and Lin, Heshan and Feng, Wu-chun}, title = "{Enhancing MapReduce via Asynchronous Data Processing}", booktitle = {16th International Conference on Parallel and Distributed Systems (ICPADS)}, address = {Shanghai, China}, month = {December}, year = {2010}, } @Misc{marwa-june-2013-mapreduce-framework, author = {Elteir, Marwa}, title = "{A MapReduce Framework for Heterogeneous Computing Architectures}", booktitle = {Virginia Tech}, month = {June}, year = {2013}, } @Article{mccaskey-quantum-softwarex18, author = { and and and and and }, title = "{}", volume = {7}, month = {August}, year = {2018}, } @InProceedings{mcclure-multiphase-flow-ipdps14, author = {E. McClure, James and Wang, Hao and F. Prins, Jan and T. Miller, Cass and Feng, Wu-chun}, title = "{Petascale Application of a Coupled CPU-GPU Algorithm for Simulation and Analysis of Multiphase Flow Solutions in Porous Medium Systems}", booktitle = {IEEE International Parallel and Distributed Processing Symposium}, address = {Phoenix, Arizona}, month = {May}, year = {2014}, } @InProceedings{minor-applying-computing-hpec2022, author = { and }, title = "{}", address = {}, month = {September}, year = {2022}, } @Misc{mohamed-thesis-2013-seqincloud, author = {Mohamed, Nabeel Meeramohideen}, title = "{Data-Intensive Biocomputing in the Cloud}", booktitle = {Virginia Tech}, month = {September}, year = {2013}, } @InProceedings{muhtadi-lasci2001-virtual, author = {Al-Muhtadi, Jalal and Feng, Wu-chun and Fisk, Michael E.}, title = "{An Inter-Realm, Cyber-Security Infrastructure for Virtual Supercomputing}", booktitle = {2nd Annual Los Alamos Computer Science Institute Symposium. (LACSI 2001)}, address = {Santa Fe, New Mexico}, month = {October}, year = {2001}, } @InProceedings{nabeel-aeromancer-bdse14, author = {Mohamed, Nabeel and Maji, Nabanita and Zhang, Jing and Timoshevskaya, Nataliya and Feng, Wu-chun}, title = "{Aeromancer: A Workflow Manager for Large-Scale MapReduce-Based Scientific Workflows}", booktitle = {3rd IEEE International Conference on Big Data Science and Engineering (BDSE)}, address = {Beijing, China}, month = {September}, year = {2014}, } @InProceedings{nabeel-bicob13-genome-analysis-cloud, author = {Mohamed, Nabeel M. and Lin, Heshan and Feng, Wu-chun}, title = "{Accelerating Data-Intensive Genome Analysis in the Cloud}", booktitle = {5th International Conference on Bioinformatics and Computational Biology (BICoB)}, address = {Honolulu, Hawaii, USA}, month = {March}, year = {2013}, } @InProceedings{narayanaswamy-hoti2007-multicore, author = {Narayanaswamy, Ganesh and Balaji, Pavan and Feng, Wu-chun}, title = "{An Analysis of 10-Gigabit Ethernet Protocol Stacks in Multicore Environments}", booktitle = {15th International Symposium on High-Performance Interconnects (HotI 2007)}, address = {Palo Alto, California}, month = {August}, year = {2007}, } @InProceedings{narayanaswamy-icccn2008-netshare, author = {Narayanaswamy, Ganesh, and Balaji, Pavan and Feng, Wu-Chun}, title = "{Impact of Network Sharing in Multi-core Architectures}", booktitle = {17th International Conference on Computer Communications and Networks (ICCCN)}, address = {St. Thomas, U.S. Virgin Islands}, month = {August}, year = {2008}, } @InProceedings{panwar-perf-projection-icpads13, author = {Panwar, Lokendra S. and Aji, Ashwin M. and Meng, Jiayuan and Balaji, Pavan and Feng, Wu-chun}, title = "{Online Performance Projection for Clusters with Heterogeneous GPUs}", booktitle = {19th IEEE International Conference on Parallel and Distributed Systems (ICPADS 2013)}, address = {Seoul, Korea}, month = {December}, year = {2013}, } @Misc{panwar-thesis-2014-perf-modeling, author = {Panwar, Lokendra Singh}, title = "{Performance Modeling, Optimization, and Characterization on Heterogeneous Architectures}", booktitle = {Virginia Tech}, month = {October}, year = {2014}, } @InProceedings{pavan-isc08-paramedic, author = {P. Balaji and W. Feng and H. Lin and J. Archuleta and S. Matsuoka and A. Warren and J. Setubal and E. Lusk and R. Thakur and I. Foster and D. S. Katz and S. Jha and K. Shinpaugh and S. Coghlan and D. Reed}, title = "{Distributed I/O with ParaMEDIC: Experiences with a Worldwide Supercomputer}", booktitle = {International Supercomputing Conference}, address = {Dresden, Germany}, month = {June}, year = {2008}, note = {Distinguished Paper Award}, } @TechReport{petrini-2001-quadrics, author = {Petrini, Fabrizio and Hoisie, Adolfy and Feng, Wu-chun and Graham, Richard}, title = "{Performance Evaluation of the Quadrics Interconnection Network}", booktitle = {Los Alamos}, month = {}, year = {2001}, } @InProceedings{petrini-adcom1999-resource, author = {Petrini, Fabrizio and Feng, Wu-chun}, title = "{Efficient Resource Utilization on a Massively Parallel Systems}", booktitle = {7th International Conference on Advanced Computing & Communications . (ADCOM'99)}, address = {Roorkee, India}, month = {December}, year = {1999}, } @InProceedings{petrini-cac2001-quadrics, author = {Petrini, Fabrizio and Hoisie, Adolfy and Feng, Wu-chun and Graham, Richard}, title = "{Performance Evaluation of the Quadrics Interconnection Network}", booktitle = {IEEE Workshop on Communication Architectures for Clusters (CAC'01), held in conjunction with IPDPS 2001}, address = {San Francisco, California}, month = {April}, year = {2001}, } @InProceedings{petrini-hoti2001-qsnet, author = {Petrini, Fabrizio and Feng, Wu-chun and Hoisie, Adolfy and Coll, Salvador and Frachtenberg, Eitan}, title = "{The Quadrics Network (QsNet): High-Performance Clustering Technology}", booktitle = {9th IEEE Hot Interconnects. (HotI'01)}, address = {Palo Alto, California}, month = {August}, year = {2001}, note = {(Selected for publication in IEEE Micro)}, } @InProceedings{petrini-icdcs2000-bcs, author = {Petrini, Fabrizio and Feng, Wu-chun}, title = "{Scheduling with Global Information in Distributed Systems}", booktitle = {20th International Conference on Distributed Computing Systems (ICDCS'00)}, address = {Taipei, Taiwan}, month = {April}, year = {2000}, } @Article{petrini-ieeemicro2002-quadrics, author = {Petrini, Fabrizio and Feng, Wu-chun and Hoisie, Adolfy and Coll, Salvador and Frachtenberg, Eitan}, title = "{The Quadrics Network : High-Performance Clustering Technology}", journal = {IEEE Micro}, volume = {22}, number = {1}, month = {January}, year = {2002}, note = {(extended version)}, } @InProceedings{petrini-ipdps2000-bcs, author = {Petrini, Fabrizio and Feng, Wu-chun}, title = "{Buffered Coscheduling: A New Methodology for Multitasking Parallel Jobs on Distributed Systems}", booktitle = {14th International Parallel and Distributed Processing Symposium (IPDPS)}, address = {Cancun, Mexico}, month = {May}, year = {2000}, } @InProceedings{petrini-jsspp2000-timesharing, author = {Petrini, Fabrizio and Feng, Wu-chun}, title = "{Time-Sharing Parallel Jobs in the Presence of Multiple Resource Requirements}", booktitle = {6th International Workshop on Job Scheduling Strategies for Parallel Processing}, month = {May}, year = {2000}, note = {Also in Lecture Notes in Computer Science Vol. 1911}, } @Article{petrini-paa2000-bcs, author = {Petrini, Fabrizio and Feng, Wu-chun}, title = "{Improved Resource Utilization with Buffered Coscheduling}", journal = {Journal of Parallel Algorithms and Applications (Special Issue)}, volume = {16}, number = {2-3}, month = {}, year = {2000}, } @InProceedings{philp-canpc1999-st, author = {Philp, Ian R. and Liong, Yin-Ling}, title = "{The Scheduled Transfer (ST) Protocol}", booktitle = {3rd International Workshop on Communication, Architecture, and Applications for Network-Based Parallel Computing (CANPC'99)}, month = {January}, year = {1999}, note = {(electronic version unavailable). Also in Lecture Notes in Computer Science, Vol. 1602}, } @Article{pickering-directive-based-cfd-compfl15, author = {Pickering, Brent P. and Jackson, Charles W. and Scogland, Thomas R.W. and Feng, Wu-Chun and Roy, Christopher}, title = "{Directive-Based GPU Programming for Computational Fluid Dynamics}", journal = {Computers and Fluids}, volume = {114}, month = {March}, year = {2015}, } @InProceedings{pumma-alleviating-learning-ccgrid2020, author = {Pumma, Sarunya and Buono, Daniele and Checconi, Fabio and Que, Xinyu and Feng, Wu-chun}, title = "{Alleviating Load Imbalance in Data Processing for Large-Scale Deep Learning}", booktitle = {20th IEEE/ACM International Symposium on Cluster, Cloud and Internet Computing}, address = {Melbourne, Australia}, month = {May}, year = {2020}, } @Misc{pumma-dissertation-2019, author = {}, title = "{}", month = {December}, year = {2019}, } @Article{pumma-lmdbio-dio-topc19, author = {Pumma, Sarunya and Si, Min and Feng, Wu-chun and Balaji, Pavan}, title = "{Scalable Deep Learning via I/O Analysis and Optimization}", journal = {ACM Transactions on Parallel Computing (TOPC)}, volume = {6}, number = {2}, month = {July}, year = {2019}, } @InProceedings{pumma-lmdbio-dm-icpads2017, author = {Pumma, Sarunya and Si, Min and Feng, Wu-chun and Balaji, Pavan}, title = "{Parallel I/O Optimizations for Scalable Deep Learning}", booktitle = {IEEE International Conference on Parallel and Distributed Systems (ICPADS)}, address = {Shenzhen, China}, month = {December}, year = {2017}, } @Misc{pumma-lmdbio-icpp18, author = {Pumma, Sarunya and Si, Min and Feng, Wu-chun and Balaji, Pavan}, title = "{I/O Bottleneck Investigation in Deep Learning Systems}", booktitle = {The 47th International Conference on Parallel Processing (ICPP)}, address = {Eugene, Oregon}, month = {August}, year = {2018}, note = { Best Student Poster Award}, } @InProceedings{pumma-lmdbio-lmm-hpcc2017, author = {Pumma, Sarunya and Si, Min and Feng, Wu-chun and Balaji, Pavan}, title = "{Towards Scalable Deep Learning via I/O Analysis and Optimization}", booktitle = {IEEE International Conferences on High Performance Computing and Communications (HPCC)}, address = {Bangkok, Thailand}, month = {December}, year = {2017}, } @Article{pumma-runtime-estimation-fgcs17, author = {Pumma, Sarunya and Feng, Wu-chun and Phunchongharn, Phond and Chapeland, Sylvain and Achalakul, Tiranee}, title = "{A Runtime Estimation Framework for ALICE}", journal = {Future Generation Computer Systems}, volume = {72}, month = {July}, year = {2017}, } @Article{ramu-mgm10-surface-potential, author = { and and and and and }, title = "{}", volume = {28}, month = {April}, year = {2010}, } @InProceedings{rao-icn2002-tcpadaptation, author = {Rao, Nageswara S. V. and Feng, Wu-chun}, title = "{Performance Tradeoffs of TCP Adaptation Methods}", booktitle = {IEEE International Conference on Networks (ICN'02)}, address = {Atlanta, Georgia}, month = {August}, year = {2002}, } @InProceedings{rubasri-data-access-hppac15, author = {Kalidas, Rubasri and Daga, Mayank and Krommydas, Konstantinos and Feng, Wu-chun}, title = "{On the Performance, Energy, and Power of Data-Access Methods in Heterogeneous Computing Systems}", booktitle = {11th Workshop on High-Performance, Power-Aware Computing (HPPAC)}, address = {Hyderabad, India}, month = {May}, year = {2015}, } @InProceedings{ryan-icpe12-cbench-numa, author = {Braithwaite, Ryan and Feng, Wu-chun and McCormick, Patrick}, title = "{Automatic NUMA Characterization using Cbench}", booktitle = {3rd ACM/SPEC International Conference on Performance Engineering (ICPE)}, address = {Boston, MA}, month = {April}, year = {2012}, } @InProceedings{sathre-composable-workflow-reconfig18, author = {Sathre, Paul and Helal, Ahmed E. and Feng, Wu-chun}, title = "{A Composable Workflow for Productive Heterogeneous Computing on FPGAs via Whole-Program Analysis and Transformation}", booktitle = {International Conference on Reconfigurable Computing and FPGAs (ReConFig)}, address = {Cancun, Mexico}, month = {December}, year = {2018}, } @InProceedings{sathre-fpga-jaccard-hpec2022, author = { and and }, title = "{}", address = {}, month = {September}, year = {2022}, } @InProceedings{sathre-metacl-hpec2020, author = { and and and }, title = "{}", address = {}, month = {September}, year = {2020}, } @InProceedings{sathre-p2s2-2012-cu2cl, author = {Sathre, Paul and Gardner, Mark and Feng, Wu-chun}, title = "{Lost in Translation: Challenges in Automating CUDA-to-OpenCL Translation}", booktitle = {5th International Workshop on Parallel Programming Models and Systems Software for High-End Computing (P2S2)}, address = {Pittsburgh, PA}, month = {September}, year = {2012}, } @InProceedings{sathre-portability-gpu-accelerated-hpcasia19, author = {Sathre, Paul and Gardner, Mark and Feng, Wu-chun}, title = "{On the Portability of GPU-Accelerated Applications via Automated Source-to-Source Translation}", booktitle = {HPC Asia: International Conference on High Performance Computing in Asia-Pacific Region}, address = {Guangzhou, China}, month = {January}, year = {2019}, } @Misc{sathre-sc14-metamorph-poster, author = {Sathre, Paul and Feng, Wu-chun}, title = "{MetaMorph: A Modular Library for Democratizing the Acceleration of Parallel Computing across Heterogeneous Devices}", booktitle = {ACM/IEEE International Conference on High-Performance Computing, Networking, Storage, and Analysis (SC|14)}, address = {New Orleans, LA}, month = {November}, year = {2014}, } @Misc{sathre-thesis-2013-cu2cl, author = {Paul D. Sathre}, title = "{On the Complexity of Robust Source-to-Source Translation from CUDA to OpenCL}", booktitle = {Virginia Tech}, month = {April}, year = {2013}, } @Article{scogland-coretsar-tpds15, author = {Scogland, Thomas R. W. and Feng, Wu-chun and Rountree, Barry and de Supinski, Bronis R.}, title = "{CoreTSAR: Core Task-Size Adapting Runtime}", journal = {IEEE Transactions on Parallel and Distributed Systems}, volume = {26}, number = {11}, month = {November}, year = {2015}, } @InProceedings{scogland-ctsar-isc14-final, author = {Scogland, Thomas R. W. and Feng, Wu-chun and Rountree, Barry and de Supinski, Bronis R.}, title = "{CoreTSAR: Adaptive Worksharing for Heterogeneous Systems}", booktitle = {International Supercomputing Conference}, address = {Leipzig, Germany}, month = {June}, year = {2014}, } @InProceedings{scogland-ctsar-isc14, author = {Scogland, Thomas R. W. and Feng, Wu-chun and Rountree, Barry and de Supinski, Bronis R.}, title = "{CoreTSAR: Adaptive Worksharing for Heterogeneous Systems}", booktitle = {International Supercomputing Conference}, address = {Leipzig, Germany}, month = {June}, year = {2014}, } @InProceedings{scogland-enahpc10-integratedgpu, author = { and and }, title = "{}", address = {}, month = {September}, year = {2010}, } @InProceedings{scogland-green500-hppac11, author = { and and }, title = "{}", address = {}, month = {May}, year = {2011}, } @InProceedings{scogland-green500-isc12, author = { and and }, title = "{}", address = {}, month = {June}, year = {2012}, } @InProceedings{scogland-het-task-sch-ipdps12, author = {Scogland, Thomas R. W. and Rountree, Barry and Feng, Wu-chun and Supinski, Bronis R. de}, title = "{Heterogeneous Task Scheduling for Accelerated OpenMP}", booktitle = {26th IEEE International Parallel and Distributed Processing Symposium}, address = {Shanghai, China}, month = {May}, year = {2012}, } @InProceedings{scogland-icpe14-power-measurement-hpc, author = { and and and and and and and }, title = "{}", address = {}, month = {March}, year = {2014}, note = {}, } @InProceedings{scogland-queues-icpe15, author = {Scogland, Thomas R. W. and Feng, Wu-chun}, title = "{Design and Evaluation of Scalable Concurrent Queues for Many-Core Architectures}", booktitle = {International Conference on Performance Engineering (ICPE)}, address = {Austin, TX, USA}, month = {January}, year = {2015}, } @InProceedings{scogland-sc2008-symmer, author = { and and and }, title = "{}", address = {}, month = {November}, year = {2008}, } @Misc{scogland-thesis-2014-runtime-adaptation, author = {Scogland, Thomas R. W.}, title = "{Runtime Adaptation for Autonomic Heterogeneous Computing}", booktitle = {Virginia Tech}, month = {July}, year = {2014}, } @Misc{scogland-worksharing-pact14, author = {Scogland, Thomas R. W. and Feng, Wu-chun}, title = "{Locality-Aware Memory Association for Multi-Target Worksharing in OpenMP}", booktitle = {23rd International Conference on Parallel Architectures and Compilation Techniques (PACT)}, address = {Alberta, Canada}, month = {August}, year = {2014}, } @InProceedings{sharma-hppac2006-green500, author = {Sharma, Sushant and Hsu, Chung-hsing and Feng, Wu-chun}, title = "{Making a Case for a Green500 List}", booktitle = {2nd IEEE Workshop on High-Performance, Power-Aware Computing (in conjunction with the 20th International Parallel and Distributed Processing Symposium (IPDPS))}, address = {Rhodes, Greece}, month = {April}, year = {2006}, } @Article{shu-fast-detection-tifs15, author = {Shu, Xiaokui and Zhang, Jing and Yao, Danfeng (Daphne) and Feng, Wu-chun}, title = "{Fast Detection of Transformed Data Leaks}", journal = {IEEE Transactions on Information Forensics and Security (TIFS)}, volume = {PP}, number = {99}, month = {November}, year = {2015}, } @InProceedings{shucai-ipdps11-gpu-blastp, author = {Xiao, Shucai and Lin, Heshan and Feng, Wu-chun}, title = "{Accelerating Protein Sequence Search in a Heterogeneous Computing System}", booktitle = {25th International Parallel and Distributed Processing Symposium}, address = {Anchorage, Alaska, USA}, month = {May}, year = {2011}, } @InProceedings{singh-icpp2009-nics, author = {Singh, Ajeet and Balaji, Pavan and Feng, Wu-chun}, title = "{GePSeA: A General-Purpose Software Acceleration Framework for Lightweight Task Offloading}", booktitle = {38th International Conference on Parallel Processing (ICPP)}, address = {Vienna, Austria}, month = {September}, year = {2009}, } @Misc{singh-thesis-2009-gepsea, author = {Singh, Ajeet}, title = "{GePSeA: A General-Purpose Software Acceleration Framework for Lightweight Task Offloading}", booktitle = {Virginia Tech}, month = {July}, year = {2009}, } @InProceedings{subramaniam-gbench-isc12, author = {Subramaniam, Balaji and Feng, Wu-chun}, title = "{GBench: Benchmarking Methodology for Evaluating the Energy Efficiency of Supercomputers}", booktitle = {International Supercomputing Conference (ISC)}, address = {Hamburg, Germany}, month = {June}, year = {2012}, } @InProceedings{subramaniam-powerprovisioning-ccgrid14, author = {Subramaniam, Balaji and Feng, Wu-chun}, title = "{Enabling Efficient Power Provisioning for Enterprise Applications}", booktitle = {14th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGrid)}, address = {Chicago, IL}, month = {May}, year = {2014}, } @InProceedings{subramaniam-tgi-hppac12, author = {Subramaniam, Balaji and Feng, Wu-chun}, title = "{The Green Index: A Metric for Evaluating System-Wide Energy Efficiency in HPC Systems}", booktitle = {8th IEEE Workshop on High-Performance, Power-Aware Computing (HPPAC)}, address = {Shanghai, China}, month = {May}, year = {2012}, } @Misc{subramaniam-thesis-2015-power, author = {Subramaniam, Balaji}, title = "{Metrics, Models and Methodologies for Energy-Proportional Computing}", booktitle = {Virginia Tech}, month = {August}, year = {2015}, } @Article{sun-ieeetose1997-completiontimes, author = {Sun, Jun and Gardner, Mark K. and Liu, Jane W. S.}, title = "{Bounding Completion Times of Jobs with Arbitrary Release Times, Variable Execution Times, and Resource Sharing}", journal = {IEEE Transactions on Software Engineering}, volume = {23}, number = {10}, month = {October}, year = {1997}, note = {[Based on research performed at UIUC]}, } @INPROCEEDINGS{sushant-icccn10-goodput, author={Sharma, S. and Gillies, D. and Wu-chun Feng}, booktitle={Computer Communications and Networks (ICCCN), 2010 Proceedings of 19th International Conference on}, title={On the Goodput of TCP NewReno in Mobile Networks}, year={2010}, month=aug., volume={}, number={}, pages={1 -8}, keywords={LTE;TCP NewReno;WiMax;congestion window threshold;mobile networks;next-generation wireless networks;packet reordering;3G mobile communication;WiMax;mobile radio;telecommunication congestion control;transport protocols;}, doi={10.1109/ICCCN.2010.5560138}, ISSN={1095-2055},} @InProceedings{thorsen-iccf2007-parallelsearch, author = {Thorsen, Oystein and Smith, Brian and Sosa, Carlos P. and Jiang, Karl and Lin, Heshan and Peters, Amanda and Feng, Wu-chun}, title = "{Parallel Genomic Sequence-Search on a Massively Parallel System}", booktitle = {ACM International Conference on Computing Frontiers}, address = {Ischia, Italy}, month = {May}, year = {2007}, } @InProceedings{thulasidasan-hpdc2003-drs, author = {Thulasidasan, Sunil and Feng, Wu-chun and Gardner, Mark K.}, title = "{Optimizing GridFTP Through Dynamic Right-Sizing}", booktitle = {IEEE Symposium on High-Performance Distributed Computing. (HPDC-2003)}, address = {Seattle, Washington}, month = {June}, year = {2003}, } @InProceedings{timoshevskaya-saisopt-iccabs14, author = {Timoshevskaya, Nataliya and Feng, Wu-chun}, title = "{SAIS-OPT: On the Characterization and Optimization of the SA-IS Algorithm for Suffix Array Construction}", booktitle = {4th IEEE International Conference on Computational Advanced in Bio and Medical Sciences}, address = {Miami Beach, Florida}, month = {June}, year = {2014}, } @InProceedings{tinnakornsrisuphap-icdcs2000-burstiness, author = {Tinnakornsrisuphap, Peerapol and Feng, Wu-chun, and Philp, Ian R.}, title = "{On the Burstiness of the TCP Congestion-Control Mechanism in a Distributed Computing System}", booktitle = {20th International Conference on Distributed Computing Systems (ICDCS'00)}, address = {Taipei, Taiwan}, month = {April}, year = {2000}, } @TechReport{tinnakornsrisuphap-techreport2000-tcprate, author = {Tinnakornsrisuphap, Peerapol and R. Agrawal and Feng, Wu-chun}, title = "{Rate-Adjustment Algorithm for Aggregate TCP Congestion Control}", booktitle = {Los Alamos}, month = {}, year = {2000}, } @InProceedings{tolmie-pi1999-hippi, author = {Tolmie, Don E. and Boorman, Mike T. and DuBois, Andy and DuBois, Dave and Feng, Wu-chun and Philp, Ian R.}, title = "{From HiPPI-800 to HiPPI-6400: A Changing of the Guard and Gateway to the Future}", booktitle = {6th International Conference on Parallel Interconnects (PI'99)}, address = {Anchorage, Alaska}, month = {October}, year = {1999}, } @InProceedings{vanichpun-icccn2002-vegas, author = {Vanichpun, Sarut and Feng, Wu-chun}, title = "{On the Transient Behavior of TCP Vegas}", booktitle = {11th IEEE International Conference on Computer Communications and Networks (IC3N'02)}, address = {Miami, Florida}, month = {October}, year = {2002}, } @Article{veeraraghavan-jgc2004-optical, author = {Veeraraghavan, Malathi and Zheng, Xuan and Feng, Wu-chun and Lee, Hojun and Chong, Edwin and Li, Hua}, title = "{Scheduling and Transport for File Transfers on High-Speed Optical Circuits}", journal = {Journal of Grid Computing}, volume = {1}, number = {4}, month = {June}, year = {2004}, } @InProceedings{veeraraghavan-opticomm2003-cheetah, author = {Veeraraghavan, Malathi and Zheng, Xuan and Lee, Hojun and Gardner, Mark K. and Feng, Wu-chun}, title = "{CHEETAH: Circuit-Switched High-Speed End-to-End Transport ArcHitecture}", booktitle = {SPIE/IEEE Optical Networking and Computer Communications Conference (OptiComm)}, address = {Dallas TX}, month = {October}, year = {2003}, note = { Best Paper Award }, } @InProceedings{verma-dynamic-profiling-dac17, author = {Verma, Anshuman and Zhou, Huiyang and Booth, Skip and King, Robbie and Coole, James and Keep, Andy and Marshall, John and Feng, Wu-chun}, title = "{Developing Dynamic Profiling and Debugging Support in OpenCL for FPGAs}", booktitle = {54th Design Automation Conference (DAC)}, address = {Austin, TX}, month = {June}, year = {2017}, } @Misc{verma-stencil-cgo17, author = {Verma, Anshuman and Feng, Wu-chun}, title = "{Accelerating 3D-Structured Grid on FPGA via OpenCL : A Case Study with OpenDwarfs}", booktitle = {International Symposium on Code Generation and Optimization (CGO)}, address = {Austin, TX}, month = {February}, year = {2017}, } @Misc{vignesh-approximate-predict-pact2020-poster, author = { and }, title = "{}", address = {}, month = {October}, year = {2020}, } @Misc{vignesh-dissertation-2019, author = {}, title = "{}", month = {May}, year = {2019}, } @InProceedings{vignesh-in-situ-hppac15, author = {Adhinarayanan, Vignesh and Feng, Wu-chun and Woodring, Jonathan and Rogers, David and Ahrens, James}, title = "{On the Greenness of In-Situ and Post-Processing Visualization Pipelines}", booktitle = {11th Workshop on High-Performance, Power-Aware Computing (HPPAC)}, address = {Hyderabad, India}, month = {May}, year = {2015}, } @Misc{vignesh-insitu-viz-sc15, author = {Adhinarayanan, Vignesh and Pakin, Scott and Rogers, David and Feng, Wu-chun and Ahrens, James}, title = "{Performance, Power, and Energy of In-Situ and Post-Processing Visualization: A Case Study in Climate Simulation}", booktitle = {ACM/IEEE International Conference for High Performance Computing, Networking, Storage and Analysis (SC)}, address = {Austin, TX, USA}, month = {November}, year = {2015}, note = { Best Poster Finalist}, } @InProceedings{vishwanath-pfldnet2006-udpoffload, author = {Vishwanath, Venkatram and Balaji, Pavan and Feng, Wu-chun and Leigh, Jason and Panda, Dhabaleswar K.}, title = "{A Case for UDP Offload Engines in LambdaGrids}", booktitle = {4th International Workshop on Protocols for Fast Long-Distance Networks (PFLDnet’06)}, address = {Nara, Japan}, month = {February}, year = {2006}, } @InProceedings{wang-papar-ipdps17, author = {Wang, Hao and Zhang, Jing and Zhang, Da and Pumma, Sarunya and Feng, Wu-chun}, title = "{PaPar: A Parallel Data Partitioning Framework for Big Data Applications}", booktitle = {IEEE International Parallel and Distributed Processing Symposium}, address = {Orlando, Florida}, month = {May}, year = {2017}, } @InProceedings{wang-transposition-ics16, author = {Wang, Hao and Liu, Weifeng and Hou, Kaixi and Feng, Wu-chun}, title = "{Parallel Transposition of Sparse Data Structures}", booktitle = {30th International Conference on Supercomputing (ICS)}, address = {Istanbul, Turkey}, month = {June}, year = {2016}, } @InProceedings{wanye-edist-cluster2023, author = { and and and }, title = "{}", address = {}, month = {November}, year = {2023}, } @InProceedings{wanye-fast-block-par-hpec19, author = { and and }, title = "{}", address = {}, month = {September}, year = {2019}, note = {}, } @InProceedings{wanye-hybrid-sbp-icpp2022, author = { and and and }, title = "{}", address = {}, month = {August}, year = {2022}, } @InProceedings{wanye-integrated-sbp-hpec2023, author = { and and and }, title = "{}", address = {}, month = {September}, year = {2023}, note = {}, } @Misc{wanye-sbp-cluster2023-poster, author = { and }, title = "{}", address = {}, month = {November}, year = {2023}, } @Article{warren-bmc10-missing-genes, author = {Warren, Andrew S. and Archuleta, Jeremy and Feng, Wu-chun and Setubal, Joao Carlos}, title = "{Missing Genes in the Annotation of Prokaryotic Genomes}", journal = {BMC Bioinformatics 2010}, volume = {11}, number = {131}, month = {March}, year = {2010}, } @InProceedings{warren-sc2002-beowulf, author = {Warren, Michael and Weigle, Eric and Feng, Wu-chun}, title = "{High-Density Computing: A 240-Node Beowulf in One Cubic Meter}", booktitle = {SC 2002: High-Performance Networking and Computing Conference (SC2002)}, address = {Baltimore, Maryland}, month = {November}, year = {2002}, } @InProceedings{weigle-hpdc2001-vegas, author = {Weigle, Eric and Feng, Wu-chun}, title = "{A Case for TCP Vegas in High-Performance Computational Grids}", booktitle = {9th IEEE International Symposium on High-Performance Distributed Computing (HPDC'01)}, address = {San Francisco, California}, month = {August}, year = {2001}, } @InProceedings{weigle-hpdc2002-drs, author = {Weigle, Eric and Feng, Wu-chun}, title = "{A Comparison of TCP Automatic-Tuning Techniques for Distributed Computing}", booktitle = {IEEE Symposium on High-Performance Distributed Computing (HPDC'02)}, address = {Edinburgh, Scotland}, month = {July}, year = {2002}, } @InProceedings{weigle-icccn2001-drs, author = {Weigle, Eric and Feng, Wu-chun}, title = "{Dynamic Right-Sizing: A Simulation Study}", booktitle = {10th International Conference on Computer Communication and Networking (ICCCN 2001)}, address = {Scottsdale, Arizona}, month = {October}, year = {2001}, } @InProceedings{weigle-lanman2001-nextgen, author = {Weigle, Eric and Feng, Wu-chun and Gardner, Mark K..}, title = "{Why TCP Will Not Scale for the Next-Generation Internet}", booktitle = {11th IEEE Workshop on Local and Metropolitan Area Networks. (LANMAN 2001)}, address = {Boulder, Colorado}, month = {March}, year = {2001}, } @InProceedings{weigle-pam2002-ticket, author = {Weigle, Eric and Feng, Wu-chun}, title = "{TICKETing High-Speed Traffic with Commodity Hardware and Software}", booktitle = {Passive & Active Measurement Workshop (PAM2002)}, address = {Fort Collins, Colorado}, month = {March}, year = {2002}, } @InProceedings{xiao-gpu-ipdps12-phdforum, author = {Xiao, Shucai and Feng, Wu-chun}, title = "{Generalizing the Utility of GPUs in Large-Scale Heterogeneous Computing Systems}", booktitle = {PhD Forum at the 26th IEEE International Parallel and Distributed Processing Symposium (IPDPS)}, address = {Shanghai, China}, month = {May}, year = {2012}, } @InProceedings{xiao-icpads2009-gpu, author = {Xiao, Shucai and Aji, Ashwin M. and Feng, Wu-chun}, title = "{On the Robust Mapping of Dynamic Programming onto a Graphics Processing Unit}", booktitle = {15th International Conference on Parallel and Distributed Systems (ICPADS)}, address = {Shenzhen, China}, month = {December}, year = {2009}, } @InProceedings{xiao-ipdps2010-gpusync, author = {Xiao, Shucai and Feng, Wu-chun}, title = "{Inter-Block GPU Communication via Fast Barrier Synchronization}", booktitle = {24th IEEE International Parallel and Distributed Processing Symposium (IPDPS)}, address = {Atlanta, Georgia, USA}, month = {April}, year = {2010}, } @InProceedings{xiao-migration-ccgrid12, author = {Xiao, Shucai and Balaji, Pavan and Dinan, James and Thakur, Rajeev and Coghlan, Susan and Lin, Heshan and Wen, Gaojin and Hong, Jue and Feng, Wu-chun}, title = "{Transparent Accelerator Migration in a Virtualized GPU Environment}", booktitle = {IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGrid)}, address = {Ottawa, Canada}, month = {May}, year = {2012}, } @Misc{xiao-thesis-2013-gneralizing-gpu, author = {Xiao, Shucai}, title = "{Generalizing the Utility of Graphics Processing Units in Large-Scale Heterogeneous Computing Systems}", booktitle = {Virginia Tech}, month = {July}, year = {2013}, } @InProceedings{xiao-vocl-inpar12, author = {Xiao, Shucai and Balaji, Pavan and Zhu, Qian and Thakur, Rajeev and Coghlan, Susan and Lin, Heshan and Wen, Gaojin and Hong, Jue and Feng, Wu-chun}, title = "{VOCL: An Optimized Environment for Transparent Virtualization of Graphics Processing Units}", booktitle = {IEEE Innovative Parallel Computing (InPar2012)}, address = {San Jose, CA}, month = {May}, year = {2012}, } @InProceedings{yang-perf-power-GPU-DVFS-greencom10, author = {Yang Jiao and Heshan Lin and Wu-chun Feng}, title = "{Characterizing Performance and Power of GPU Applications with DVFS}", booktitle = {IEEE/ACM International Conference on Green Computing and Communications (GreenCom)}, address = {Hangzhou, China}, month = {December}, year = {2010}, } @Article{yin-sdaft-parallel-computing, author = {Yin, Jiangling and Zhang, Junyao and Wang, Jun and Feng, Wu-chun}, title = "{SDAFT: A Novel Scalable Data Access Framework for Parallel BLAST}", journal = {Parallel Computing}, volume = {40}, number = {10}, month = {August}, year = {2014}, } @InProceedings{youssef-autopager-hpec2022, author = { and and and and }, title = "{}", address = {}, month = {September}, year = {2022}, note = {}, } @InProceedings{youssef-privateer-hpec2021, author = { and and and }, title = "{}", address = {}, month = {September}, year = {2021}, } @InProceedings{youssef-privateer-hpec2022, author = { and and and and }, title = "{}", address = {}, month = {September}, year = {2022}, note = {}, } @InProceedings{youssef-sparkleblast-ccgrid2020, author = {Youssef, Karim and Feng, Wu-chun}, title = "{SparkLeBLAST: Scalable Parallelization of BLAST Sequence Alignment Using Spark}", booktitle = {20th IEEE/ACM International Symposium on Cluster, Cloud and Internet Computing (CCGrid)}, address = {Melbourne, Victoria, Australia}, month = {May}, year = {2020}, } @Misc{youssef-sparsestore-sc2020, author = { and and and and }, title = "{}", address = {}, month = {November}, year = {2020}, } @Misc{yu-ar-iiswc17, author = {Yu, Xiaodong and Hou, Kaixi and Wang, Hao and Feng, Wu-chun}, title = "{A Framework for Fast and Fair Evaluation of Automata Processing Hardware}", booktitle = {IEEE International Symposium on Workload Characterization (IISWC)}, address = {Seattle, WA}, month = {October}, year = {2017}, } @InProceedings{yu-cuart-ccgrid16, author = {Yu, Xiaodong and Wang, Hao and Feng, Wu-chun and Gong, Hao and Cao, Guohua}, title = "{cuART: Fine-Grained Algebraic Reconstruction Technique for Computed Tomography Images on GPUs}", booktitle = {16th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGrid)}, address = {Cartagena, Colombia}, month = {May}, year = {2016}, } @InProceedings{yu-demysifying-ics17, author = {Nourian, Marziyeh and Wang, Xiang and Yu, Xiaodong and Feng, Wu-chun and Becchi, Michela}, title = "{Demystifying Automata Processing: GPUs, FPGAs or Micron’s AP?}", booktitle = {31st ACM International Conference on Supercomputing}, address = {Chicago, IL}, month = {June}, year = {2017}, } @Article{yu-gpu-ct-jsign, author = {Yu, Xiaodong and Wang, Hao and Feng, Wu-chun and Gong, Hao and Cao, Guohua}, title = "{GPU-Based Iterative Medical CT Image Reconstructions}", journal = {Journal of Signal Processing Systems}, volume = {91}, number = {3-4}, month = {March}, year = {2018}, } @InProceedings{yu-gpu-image-recognition-cf17, author = {Xiaodong Yu, Hao Wang, Wu-chun Feng, Hao Gong, Guohua Cao}, title = "{An Enhanced Image Reconstruction Tool for Computed Tomography on GPUs}", booktitle = {ACM Computing Frontiers}, address = {Siena, Italy}, month = {May}, year = {2017}, } @InProceedings{yu-o3fa-ancs16, author = {Yu, Xiaodong and Feng, Wu-chun and Yao, Danfeng (Daphne) and Becchi, Michela}, title = "{O3FA: A Scalable Finite Automata-based Pattern-Matching Engine for Out-of-Order Deep Packet Inspection}", booktitle = {ACM/IEEE Symposium on Architectures for Networking and Communications Systems}, address = {Santa Clara, CA}, month = {March}, year = {2016}, } @InProceedings{yu-robotomata-bigdata17, author = {Yu, Xiaodong and Hou, Kaixi and Wang, Hao and Feng, Wu-chun}, title = "{Robotomata: A Framework for Approximate Pattern Matching of Big Data on an Automata Processor}", booktitle = {IEEE International Conference on Big Data}, address = {Boston, MA}, month = {December}, year = {2017}, } @InProceedings{zhang-consolidation-hpcc13, author = {Zhang, Jing and Wang, Hao and Lin, Heshan and Feng, Wu-chun}, title = "{Consolidating Applications for Energy Efficiency in Heterogeneous Computing Systems}", booktitle = {15th IEEE International Conference on High Performance Computing and Communications (HPCC 2013)}, address = {Zhangjiajie, China}, month = {November}, year = {2013}, } @Misc{zhang-cuBLASTP-gtc14-poster, author = {Zhang, Jing and Wang, Hao and Lin, Heshan and Feng, Wu-chun}, title = "{cuBLASTP: Fine-Grained Parallelization of Protein Sequence Search on a GPU}", booktitle = {GPU Technology Conference (GTC)}, address = {San Jose, CA, USA}, month = {March}, year = {2014}, } @InProceedings{zhang-cublastp-ipdps14, author = {Zhang, Jing and Wang, Hao and Lin, Heshan and Feng, Wu-chun}, title = "{cuBLASTP: Fine-Grained Parallelization of Protein Sequence Search on a GPU}", booktitle = {IEEE International Parallel and Distributed Processing Symposium}, address = {Phoenix, Arizona, USA}, month = {May}, year = {2014}, } @Article{zhang-cublastp-tcbb15, author = {Zhang, Jing and Wang, Hao and Feng, Wu-chun}, title = "{cuBLASTP: Fine-Grained Parallelization of Protein Sequence Search on CPU+GPU}", journal = {IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)}, volume = {PP}, number = {99}, month = {October}, year = {2015}, } @Article{zhang-jpds2005-udp, author = {Zhang, Xiao and Bhuyan, Laxmi N. and Feng, Wu-chun}, title = "{Anatomy of UDP and M-VIA for Cluster Communication}", journal = {Journal of Parallel and Distributed Computing, Special Issue: Design and Performance of Networks for Super-, Cluster-, and Grid-Computing}, volume = {65}, number = {10}, month = {October}, year = {2005}, } @Article{zhang-mublastp-bmc16, author = {Zhang, Jing and Misra, Sanchit and Wang, Hao and Feng, Wu-chun}, title = "{muBLASTP: Database-Indexed Protein Sequence Search on Multicore CPUs}", journal = {BMC Bioinformatics}, volume = {17}, number = {1}, month = {November}, year = {2016}, } @InProceedings{zhang-pdindel-iccabs15, author = {Zhang, Da and Wang, Hao and Hou, Kaixi and Zhang, Jing and Feng, Wu-chun}, title = "{pDindel: Accelerating InDel Detection on a Multicore CPU Architecture with SIMD}", booktitle = {5th IEEE International Conference on Computational Advances in Bio and Medical Sciences (ICCABS)}, address = {Miami, FL, USA}, month = {October}, year = {2015}, } @Misc{zhang-rapid-screening-codaspy15, author = {Shu, Xiaokui and Zhang, Jing and Yao, Danfeng (Daphne) and Feng, Wu-chun}, title = "{Rapid Screening of Transformed Data Leaks with Efficient Algorithms and Parallel Computing}", booktitle = {ACM Conference on Data and Application Security and Privacy (CODASPY)}, address = {San Antonio, TX, USA}, month = {March}, year = {2015}, note = { Best Poster Award}, } @InProceedings{zhang-seq-search-ipdps17, author = {Zhang, Jing and Misra, Sanchit and Wang, Hao and Feng, Wu-chun}, title = "{Eliminating Irregularities of Protein Sequence Search on Multicore Architectures}", booktitle = {IEEE International Parallel and Distributed Processing Symposium}, address = {Orlando, Florida}, month = {May}, year = {2017}, } @Misc{zhang-thesis-2018-opt-irreular-applications, author = {Zhang, Jing}, title = "{Transforming and Optimizing Irregular Applications for Parallel Architectures}", booktitle = {Virginia Tech}, month = {February}, year = {2018}, } @InProceedings{zhang_taming_irr_app_cf18, author = { and and and and }, title = "{}", address = {}, month = {May}, year = {2018}, }